BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZH04RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1550 0.0
>3x_Contig1794
Length = 36744
Score = 1550 bits (782), Expect = 0.0
Identities = 869/886 (98%), Gaps = 11/886 (1%)
Strand = Plus / Plus
Query: 48 ctctttcaaaaggatggatttcacattcttataagtcttgacgacattccatgcgacaaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19618 ctctttcaaaaggatggatttcacattcttataagtcttgacgacattccatgcgacaaa 19677
Query: 108 taacaaaaggaagtccttccaaggttttctagtctcgaataatatcctgtataatctccc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19678 taacaaaaggaagtccttccaaggttttctagtctcgaataatatcctgtataatctccc 19737
Query: 168 cttcgattgatttctgtggtataggattggtatcaagagactagctgccaattgcctgag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19738 cttcgattgatttctgtggtataggattggtatcaagagactagctgccaattgcctgag 19797
Query: 228 aagaatccaacggcgttcgcttatactggaataatcaacccagagcttgatttgatctac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19798 aagaatccaacggcgttcgcttatactggaataatcaacccagagcttgatttgatctac 19857
Query: 288 aacagattctacagcccagtatgaaacaatccaatgcggtagcttagccttgagctgcga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19858 aacagattctacagcccagtatgaaacaatccaatgcggtagcttagccttgagctgcga 19917
Query: 348 gagaccaatcgttaaacccaggaaccagctggcatgtctttgacgaattatccttctcag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19918 gagaccaatcgttaaacccaggaaccagctggcatgtctttgacgaattatccttctcag 19977
Query: 408 taacggtatagcaacaacgataggcaaaccatcgaataatgaactggccgttaacttccg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19978 taacggtatagcaacaacgataggcaaaccatcgaataatgaactggccgttaacttccg 20037
Query: 468 gtgcttttttaacaatgctataaacccattaacaccaataactccaacgatgcgacgata 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20038 gtgcttttttaacaatgctataaacccattaacaccaataactccaacgatgcgacgata 20097
Query: 528 caaagcgtttctatcaatttccgaatcatagtcgtacgctaaaaatcgaatgaatctcgc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20098 caaagcgtttctatcaatttccgaatcatagtcgtacgctaaaaatcgaatgaatctcgc 20157
Query: 588 caaacgagtattcgaattcaatgtcatgccttatccaatcagtcataagttctgcaaccc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20158 caaacgagtattcgaattcaatgtcatgccttatccaatcagtcataagttctgcaaccc 20217
Query: 648 tcacctgctgattgaacgttcatatatgcctttcaattgacgtgaagtctatcattcgtt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20218 tcacctgctgattgaacgttcatatatgcctttcaattgacgtgaagtctatcattcgtt 20277
Query: 708 cgttatctacctttcggtgaaatctaatcctttaaaaatgtttggaaaaatgttactaaa 767
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 20278 cgttatctacctttcggtgaaatctaatcctttaaaattgtttggaaaaatgttactaaa 20337
Query: 768 gcctttgaaatttaaaacga-tccttatatcgcgaacttttcaccaccccctttaacaa- 825
|||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 20338 gcctttgaaa-ttaaaacgattccttatatcgcgaacttttcacca-cccctttaacaaa 20395
Query: 826 -aacactcggcgagtgaaatanna-gaccagc-tactaggaggacagttctcg-aactag 881
|||||||||||||||||||| | ||||||| |||||| || |||||||||| ||||||
Sbjct: 20396 gaacactcggcgagtgaaataaaaggaccagcttactagaagaacagttctcgaaactag 20455
Query: 882 a-tacgtgttaaaga-gtctgtgccatttaa-gtcnaggcattgtt 924
| ||||||||||||| ||||||||||||||| ||| ||||||||||
Sbjct: 20456 attacgtgttaaagatgtctgtgccatttaaggtcgaggcattgtt 20501
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5410
Number of Sequences: 1807
Number of extensions: 5410
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)