BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZH05FM1.SCF screened BAC_end
(992 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1726 993 0.0
>3x_Contig1726
Length = 20144
Score = 993 bits (501), Expect = 0.0
Identities = 535/545 (98%), Gaps = 1/545 (0%)
Strand = Plus / Minus
Query: 87 ccatggaacgcttcggccgacagctttgcgacatccgagattgaaagtatgttcaaactg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18534 ccatggaacgcttcggccgacagctttgcgacatccgagattgaaagtatgttcaaactg 18475
Query: 147 taagtcgaggtttttagtagagctgttggttgctgtatgctcaatatcaacaagggttgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18474 taagtcgaggtttttagtagagctgttggttgctgtatgctcaatatcaacaagggttgt 18415
Query: 207 tgaatggtcatattctgtatcattttccaaaattcttcttctcttgcttgttggttcttg 266
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18414 tgaatggtcatattctggatcattttccaaaattcttcttctcttgcttgttggttcttg 18355
Query: 267 aaaaaactcagaagattgcgtctgcctctgatagtatgtttctagtatgcccgaactttt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18354 aaaaaactcagaagattgcgtctgcctctgatagtatgtttctagtatgcccgaactttt 18295
Query: 327 aatttgatcgtcaactatctctgtagtgttcctggcacggatccgagaaagaataaatgg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18294 aatttgatcgtcaactatctctgtagtgttcctggcacggatccgagaaagaataaatgg 18235
Query: 387 atttgaaagagtcgtatttctggatagctctacgtcttcaagatctcgctcaatgcagca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18234 atttgaaagagtcgtatttctggatagctctacgtcttcaagatctcgctcaatgcagca 18175
Query: 447 atcctcggtgttcacaatgtcagaatatagaaggtttttccttactggtgaagatctacc 506
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 18174 atcctcggtgttcacaatgtcagaatatagaaggttttcccttactggtgaagatctacc 18115
Query: 507 atcggatagcgtgcccctatacatgtctgtcaaccattcagattccttctcgaagatttg 566
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 18114 atcggatagcgtgccgctatacatgtctgtcaaccattcagattccttctcgagaatttg 18055
Query: 567 ttgagtagggttattggtttattgcccgtgaatttgctttggaatgtcaccttgttttaa 626
||||||||||||||||||| ||||| |||||||||||||||||||||| ||||| ||||
Sbjct: 18054 ttgagtagggttattggttatttgccggtgaatttgctttggaatgtca-cttgtattaa 17996
Query: 627 ttatt 631
|||||
Sbjct: 17995 ttatt 17991
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,713
Number of Sequences: 1807
Number of extensions: 16713
Number of successful extensions: 287
Number of sequences better than 1.0e-20: 1
length of query: 992
length of database: 10,358,551
effective HSP length: 16
effective length of query: 976
effective length of database: 10,329,639
effective search space: 10081727664
effective search space used: 10081727664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)