BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZH06FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1743 793 0.0
>3x_Contig1743
Length = 20172
Score = 793 bits (400), Expect = 0.0
Identities = 498/520 (95%), Gaps = 8/520 (1%)
Strand = Plus / Plus
Query: 86 ctgatgtagggggaaatggtaagcatcaggaaggtgaggacaaaactcctgataaaaaga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18862 ctgatgtagggggaaatggtaagcatcaggaaggtgaggacaaaactcctgataaaaaga 18921
Query: 146 ccaacaaaccgtcatctacagtttctggtgggctagctgatgttaaacggttgttttact 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18922 ccaacaaaccgtcatctacagtttctggtgggctagctgatgttaaacggttgttttact 18981
Query: 206 tggcaaggcatgtatttaaaatgctagtattggcggtgtcattattgaccgtctcctgta 265
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18982 tggcaaggcatgattggaaaatgctagtattggcggtgtcattattgaccgtctcctgta 19041
Query: 266 ccattggtatggcagtaccgaaggtgatcgggttagtattagatgctaccaagaatgcac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19042 ccattggtatggcagtaccgaaggtgatcgggttagtattagatgctaccaagaatgcac 19101
Query: 326 taagcggcagtaataccaataacggcaatggagggttggaagattcgaaaagtcttactt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19102 taagcggcagtaataccaataacggcaatggagggttggaagattcgaaaagtcttactt 19161
Query: 386 tggatgatcttcccccaattgtgggagacatacagctatatgactttttccttttattcg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19162 tggatgatcttcccccaattgtgggagacatacagctatatgactttttccttttattcg 19221
Query: 446 gtggggccttgtttgataggaaaccat-gctaattttgggaagagtagtactcccttaag 504
||||||||||| |||||||| |||||| ||||||||| |||||||||||||| |||||||
Sbjct: 19222 gtggggccttg-ttgatagg-aaccatggctaatttt-ggaagagtagtact-ccttaag 19277
Query: 505 aatttagggaaaggacttgtggccaggattaagatcaaacgttttcaagaaaactttgcc 564
| |||||| || |||||||||||| ||||||||||||||||| ||||||| ||| |||
Sbjct: 19278 atattaggggaaagacttgtggcca-gattaagatcaaacgttatcaagaagactatgca 19336
Query: 565 tcatgatttggaaattttatgacaaaaaccaaggttggtg 604
||||||| ||| |||||||||||| ||| |||||||||||
Sbjct: 19337 tcatgatatgg-aattttatgacagaaa-caaggttggtg 19374
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7612
Number of Sequences: 1807
Number of extensions: 7612
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)