BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZH06RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1805 1475 0.0
>3x_Contig1805
Length = 19369
Score = 1475 bits (744), Expect = 0.0
Identities = 818/840 (97%), Gaps = 3/840 (0%)
Strand = Plus / Minus
Query: 48 ccagaacgaagattgtcagttaacttacatctgtaacatttccaacgcgtgttttcattg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3311 ccagaacgaagattgtcagttaacttacatctgtaacatttccaacgcgtgttttcattg 3252
Query: 108 catgttatcggattcgttatcaatgcattcaaacatatgccacagtcaagtgtcagcttc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3251 catgttatcggattcgttatcaatgcattcaaacatatgccacagtcaagtgtcagcttc 3192
Query: 168 tacaggtttgagagaacattgtgaacgcatggtcgtttgcaccacagtttatagaattgt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3191 tacaggtttgagagaacattgtgaacgcatggtcgtttgcaccacagtttatagaattgt 3132
Query: 228 tcatgtctacgtgtgtataatgtcggaaggatttcctattggcctctgaaaaccagtttc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3131 tcatgtctacgtgtgtataatgtcggaaggatttcctattggcctctgaaaaccagtttc 3072
Query: 288 actttccgttgatttgtttctaaacgttttccagaaaagagacaaataaaggctgaattg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3071 actttccgttgatttgtttctaaacgttttccagaaaagagacaaataaaggctgaattg 3012
Query: 348 cgatgcatgcctgttctggtatctgatagggatccataaaagctgtgataacttgtttca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3011 cgatgcatgcctgttctggtatctgatagggatccataaaagctgtgataacttgtttca 2952
Query: 408 aagcacatttgataagcaatttccaggctcaagacaaacggtccatcattcgaacttcag 467
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2951 aagcacatttgtaaagcaatttccaggctcaagacaaacggtccatcattcgaacttcag 2892
Query: 468 ctctatatagtttcatgggattgggaagagggtgtttctagtgaatagtttaagagagta 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2891 ctctatatagtttcatgggattgggaagagggtgtttctagtgaatagtttaagagagta 2832
Query: 528 cgaatctggaacagtaacatcaaaacggtaagctcgcctggaaatatactacaggcggtt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2831 cgaatctggaacagtaacatcaaaacggtaagctcgcctggaaatatactacaggcggtt 2772
Query: 588 tctttacgattcgtgaaactgtctacgaactcagcgtttggtggctggttgaacag-aan 646
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2771 tctttacgattcgtgaaactgtctacgaactcagcgtttggtggctggttgaacagaaaa 2712
Query: 647 aaacaccgatagcataataacttagttgaaaattgctttatcatcctaacgagtacctga 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2711 aaacaccgatagcataataacttagttgaaaattgctttatcatcctaacgagtacctga 2652
Query: 707 aaatccaag-aaagtagtaacaacctcatcattcctttatccattcgcaatcataccatt 765
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2651 aaatccaagaaaagtagtaacaacctcatcattccttattccattcgcaatcataccatt 2592
Query: 766 ttgattttcaggaataaaaaa-accaaatgggcatgacgggcccagacgaaaaactgttt 824
|||||||||| |||||||||| || |||||| |||||||| || ||||||||||||| |
Sbjct: 2591 ttgattttcaagaataaaaaatacaaaatggacatgacggcccaagacgaaaaactggtc 2532
Query: 825 cacgaggaacaagtattacaatgtttcatagcacttatttncttttnctgcttntaccaa 884
|||||||||||||||| |||||||| ||||||||||||| ||||| ||||| ||||||
Sbjct: 2531 cacgaggaacaagtataacaatgttcaatagcacttatttccttttcctgctagtaccaa 2472
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5890
Number of Sequences: 1807
Number of extensions: 5890
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)