BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZH07FM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1625 1239 0.0
>3x_Contig1625
Length = 13618
Score = 1239 bits (625), Expect = 0.0
Identities = 705/725 (97%), Gaps = 5/725 (0%)
Strand = Plus / Minus
Query: 90 acgtagcatgatttattcagttgactattcgggacgagattcctcctatgagaattcaaa 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5888 acgtagcatgatttattcagttgactattcgggacgagattcctcctatgagaattcaaa 5829
Query: 150 tattcaattacctatgcttcctatgactgagcttaatgatgcagaattaactataaatga 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5828 tattcaattacctatgcttcctatgactgagcttaatgatgcagaattaactataaatga 5769
Query: 210 atcaaaagctttatggagatttaatttagagtttggcggaaattatgacattagagaatt 269
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5768 atcaaaagccttatggagatttaatttagagtttggcggaaattatgacattagagaatt 5709
Query: 270 accagaaggtatgcagacagtgaaagatatagagaatattgtcaaatgtgcaaaaactgt 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5708 accagaaggtatgcagacagtgaaagatatagagaatattgtcaaatgtgcaaaaactgt 5649
Query: 330 taatgaattcaagctgcagatttcgcagcgtttattggaatggaaaaacagatatgtcaa 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5648 taatgaattcaagctgcagatttcgcagcgtttattggaatggaaaaacagatatgtcaa 5589
Query: 390 tcacaagattctcaatatgaaatctttgataactttcctcacgatacctattaggcttca 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5588 tcacaagattctcaatatgaaatctttgataactttcctcacgatacctattaggcttca 5529
Query: 450 tgaacccaatgagttcaaattgaggttacaggaattcacattccaagcgttcgaattcaa 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5528 tgaacccaatgagttcaaattgaggttacaggaattcacattccaagcgttcgaattcaa 5469
Query: 510 cgaaagggtggaatatcaattcaaaaaatcaaaaacgaacgaactggaatcacctgtact 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5468 cgaaagggtggaatatcaattcaaaaaatcaaaaacgaacgaactggaatcacctgtact 5409
Query: 570 ctcaaaagattttaacacaaccgacagcaatgccttggttgataacggtattataccctc 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5408 ctcaaaagattttaacacaaccgacagcaatgccttggttgataacggtattataccctc 5349
Query: 630 agaattccttctatactttgttttctatgaaacacaaactagccacttattgtgctatct 689
|||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 5348 agaattccttctatac-ttggtttctatgaaacacaaactagccactaattgtgctatct 5290
Query: 690 acgaaatgttcatgaaagcatccatagcgttccatgaatacgaaccttggtatgacacca 749
||||| ||| ||||||||| |||||||||||||||| |||||| |||| ||||||| ||
Sbjct: 5289 acgaagtgtcgatgaaagcagccatagcgttccatgattacgaa-cttgctatgacaaca 5231
Query: 750 tggaagaaccgaagtaaatttccaaatgacttgacgctttccagaaatttaacacccggt 809
||||||||| || ||||| ||| |||||| |||||||||||||||| |||||||| |||
Sbjct: 5230 tggaagaacagaggtaaa-ttcagaatgac-tgacgctttccagaaa-ttaacaccaggt 5174
Query: 810 gaaag 814
|||||
Sbjct: 5173 gaaag 5169
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7459
Number of Sequences: 1807
Number of extensions: 7459
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)