BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZH07RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1520 1598 0.0
>3x_Contig1520
Length = 10750
Score = 1598 bits (806), Expect = 0.0
Identities = 861/875 (98%), Gaps = 4/875 (0%)
Strand = Plus / Minus
Query: 49 tttagcatgtgtatgggcttcatgaaacaaaatccacgtgacctcaaattactttacgta 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 tttagcatgtgtatgggcttcatgaaacaaaatccacgtgacctcaaattactttacgta 919
Query: 109 tcaattcccttttctgatctctaattgttttgtaaacaaaaaaaaaacataaacatcaag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 tcaattcccttttctgatctctaattgttttgtaaacaaaaaaaaaacataaacatcaag 859
Query: 169 aacaactggaatcaataacaaacactagcggtctcaattgcatgaataaattcaattgaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 aacaactggaatcaataacaaacactagcggtctcaattgcatgaataaattcaattgaa 799
Query: 229 gagcattgatattgacttctggttccaataacgtagcctcattgaccaaattacaggtaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gagcattgatattgacttctggttccaataacgtagcctcattgaccaaattacaggtaa 739
Query: 289 actcaatttgggtacgaggctgttaggaaaacatgagtcaacagagggaaaaagtatggg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 actcaatttgggtacgaggctgttaggaaaacatgagtcaacagagggaaaaagtatggg 679
Query: 349 tatctgatgaacgagaggtttttgttcaaggtcaattggtagagcggaaagtggttaaga 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tatctgatgaacgagaggtttttgttcaaggtcaattggtagagcggaaagtggttaaga 619
Query: 409 ataagcaaggccaggaacaagcggttgctgtggttagtgtgaatggtaaggaaacagagt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ataagcaaggccaggaacaagcggttgctgtggttagtgtgaatggtaaggaaacagagt 559
Query: 469 tttccgaagacgatgtagcctcggtgaatccttctacctttgataaagtggacgacttgt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tttccgaagacgatgtagcctcggtgaatccttctacctttgataaagtggacgacttgt 499
Query: 529 ctgaattgacgcatcttaatgaagcttctgttcttttcaatttacagaacaggtaccaag 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctgaattgacgcatcttaatgaagcttctgttcttttcaatttacagaacaggtaccaag 439
Query: 589 atgatttgatttacacttattcaggattatttttagtggccattaacccatacagtaata 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atgatttgatttacacttattcaggattatttttagtggccattaacccatacagtaata 379
Query: 649 tcaagatatatagtaacagctatatcaaattataccatggatctccgaangaggataata 708
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 378 tcaagatatatagtaacagctatatcaaattataccatggatctccgaaggaggataata 319
Query: 709 aaccgcatatcttcgctgtcgctgaacaggcttaccagaatcttttgcatcaaaagcagg 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaccgcatatcttcgctgtcgctgaacaggcttaccagaatcttttgcatcaaaagcagg 259
Query: 769 atcaatcgatcttggttaccggtgagtcangtgctggtaaaacagagaatac-anaaaaa 827
||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||
Sbjct: 258 atcaatcgatcttggttaccggtgagtcaggtgctggtaaaacagagaatacaaaaaaaa 199
Query: 828 tctttacatatttggcatccattacgacggatgattaga-tttattaaatcagacgaaca 886
|||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 198 tcttacaatatttggcatccattacgacggatgataagattttattaaatcagacgaacg 139
Query: 887 attcgttggaaa-gaaaatcttac-atcaaaccca 919
| ||||| |||| ||||||||||| ||||||||||
Sbjct: 138 aatcgtttgaaaggaaaatcttacaatcaaaccca 104
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8567
Number of Sequences: 1807
Number of extensions: 8567
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)