BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZH08RM1.SCF screened BAC_end
(989 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1651 797 0.0
3x_Contig1782 749 0.0
3x_Contig869 131 3e-30
3x_Contig1717 127 5e-29
3x_Contig278 103 7e-22
>3x_Contig1651
Length = 13087
Score = 797 bits (402), Expect = 0.0
Identities = 409/410 (99%), Gaps = 1/410 (0%)
Strand = Plus / Plus
Query: 45 ttcaagccgaactaatctatatcagatgtgtttttataagatgaaaggattgcagaggac 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12671 ttcaagccgaactaatctatatcagatgtgtttttataagatgaaaggattgcagaggac 12730
Query: 105 taatacgttgaaattaaggttcttaaaaaaacagattggagatttacgtgtcatcataag 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12731 taatacgttgaaattaaggttcttaaaaaaacagattggagatttacgtgtcatcataag 12790
Query: 165 tttgaatagaattacggaatattaaaaacatctaaaccagtaccactcaccactataatt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12791 tttgaatagaattacggaatattaaaaacatctaaaccagtaccactcaccactataatt 12850
Query: 225 cccagaaaagtgattatttggtgttgcattggagaagacacacattttgtttccgacggt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12851 cccagaaaagtgattatttggtgttgcattggagaagacacacattttgtttccgacggt 12910
Query: 285 -catatatctattacagtaccttggtagttaataagaggagaaactaaaaaaagaggtcc 343
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12911 gcatatatctattacagtaccttggtagttaataagaggagaaactaaaaaaagaggtcc 12970
Query: 344 tacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccactacactat 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12971 tacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccactacactat 13030
Query: 404 agaaccgaaattcttacgaaggcgccaaaaaacactggtttcaaattgcg 453
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13031 agaaccgaaattcttacgaaggcgccaaaaaacactggtttcaaattgcg 13080
>3x_Contig1782
Length = 24703
Score = 749 bits (378), Expect = 0.0
Identities = 502/530 (94%), Gaps = 11/530 (2%)
Strand = Plus / Minus
Query: 454 ggcagtagcatgtcttcagccaactgccctctctcattcacaaaattaggttcgcatatt 513
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 24703 ggcagtagcatgtcttcagccaactgcgttctctcattcacaaaattaggttcgcatatt 24644
Query: 514 caccacacatagatcc-aacaaatgggaaattaaattgtagcctttgtagcttgttaaat 572
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643 caccacacatagatcccaacaaatgggaaattaaattgtagcctttgtagcttgttaaat 24584
Query: 573 ctaaaataacgttacctcttttctttccattattattcagacattttcatttaaataatt 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24583 ctaaaataacgttacctcttttctttccattattattcagacattttcatttaaataatt 24524
Query: 633 gctgtctttattttaattgttaaatgtccaaactaactcacaaatgttctaattcacaaa 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24523 gctgtctttattttaattgttaaatgtccaaactaactcacaaatgttctaattcacaaa 24464
Query: 693 gcaacttcggctaaggtcaaacttatagtgaaaattacttcagttagtgcattagatgct 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24463 gcaacttcggctaaggtcaaacttatagtgaaaattacttcagttagtgcattagatgct 24404
Query: 753 gatgagtgaacggcagagcatagtatgcttcacttagcttgttccanaaaaaaaagtana 812
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 24403 gatgagtgaacggcagagcatagtatgcttcacttagcttgttccaaaaaaaaaagtaaa 24344
Query: 813 aaaacaaatgaattcgncccagaatcgaactgggggacgttcttgcgtgttaaagcagat 872
||||||||||| |||| ||||| |||||||| |||||||||| |||||||| ||||||||
Sbjct: 24343 aaaacaaatgatttcg-cccaggatcgaact-ggggacgttc-tgcgtgtt-aagcagat 24288
Query: 873 gtcattanccgactagacccacgaaaccnaacttgnttgaaatacgaaaataattgaccg 932
| || || ||||||||| |||||||||| |||||| |||||||||||| || |||||||
Sbjct: 24287 gcca-taaccgactaga-ccacgaaacc-aacttg-ttgaaatacgaacat-attgacc- 24234
Query: 933 ggacaccatnaggcactcaatttactttggaaactacaccccccggccct 982
|||| ||| ||||||||||| | ||||||||||||||||||| ||||
Sbjct: 24233 ggaccacatcaggcactcaatatcacttggaaactacaccccccgcccct 24184
>3x_Contig869
Length = 2873
Score = 131 bits (66), Expect = 3e-30
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 338 aggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 397
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 aggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 1064
Query: 398 cactatagaaccga 411
||||||| ||||||
Sbjct: 1065 cactatacaaccga 1078
>3x_Contig1717
Length = 18389
Score = 127 bits (64), Expect = 5e-29
Identities = 70/72 (97%)
Strand = Plus / Minus
Query: 338 aggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 397
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 aggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccacta 1708
Query: 398 cactatagaacc 409
||||||| ||||
Sbjct: 1707 cactatacaacc 1696
>3x_Contig278
Length = 1114
Score = 103 bits (52), Expect = 7e-22
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 338 aggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataacc 393
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 aggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataacc 1048
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6943
Number of Sequences: 1807
Number of extensions: 6943
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 5
length of query: 989
length of database: 10,358,551
effective HSP length: 16
effective length of query: 973
effective length of database: 10,329,639
effective search space: 10050738747
effective search space used: 10050738747
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)