BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC45ZH09FM1.SCF screened BAC_end
         (965 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1497                                                         565   e-161

>3x_Contig1497 
          Length = 11582

 Score =  565 bits (285), Expect = e-161
 Identities = 394/421 (93%), Gaps = 7/421 (1%)
 Strand = Plus / Minus

                                                                         
Query: 279   ctggtaagaaagctattcaagaattgaactatgctgaaatcaacggtagaccatgtagaa 338
             |||||||||  ||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 11280 ctggtaagattgctattcaagttttgaactatgctgaaatcaacggtagaccatgtagaa 11221

                                                                         
Query: 339   ttatgtggtccgaacgtgacccagctatcagaaagaagggttctggtaacattttcatca 398
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11220 ttatgtggtccgaacgtgacccagctatcagaaagaagggttctggtaacattttcatca 11161

                                                                         
Query: 399   agaacttgcacccagccattgacaacaaggctttgcatgaaactttctccactttcggtg 458
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11160 agaacttgcacccagccattgacaacaaggctttgcatgaaactttctccactttcggtg 11101

                                                                         
Query: 459   aagtcttgtcttgtaaagttgcttttagatgagaattggaactctagaggcttcggtttc 518
             |||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||
Sbjct: 11100 aagtcttgtcttgtaaagttgc-tttagatgagaatggaaactctagaggcttcggtttc 11042

                                                                         
Query: 519   gttcattt-aaggaagaatccgatgctaaagattctattgaaacccgtc-acggtttgtt 576
             |||||||| |||||||||||||||||||| ||| |||||| || ||||| ||||| ||||
Sbjct: 11041 gttcatttcaaggaagaatccgatgctaaggatgctattg-aagccgtcaacggtatgtt 10983

                                                                         
Query: 577   gatgaacggtttggaggtttacgttgccatgcacgttcc-aagaaagaccgtattttcca 635
             ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| | | |
Sbjct: 10982 gatgaacggtttggaagtttacgttgccatgcacgttccaaagaaggaccgtatctccaa 10923

                                                                         
Query: 636   gttggaagaagcc-aggcttacttta-caacatttacgtcaaaaacatttaccttgaaac 693
             ||||||||||||| ||||| |||| | ||||||||||||||| |||||| || |||||||
Sbjct: 10922 gttggaagaagccaaggctaacttcaccaacatttacgtcaagaacattgacgttgaaac 10863

              
Query: 694   c 694
             |
Sbjct: 10862 c 10862


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9840
Number of Sequences: 1807
Number of extensions: 9840
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)