BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZH09RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1782 1281 0.0
>3x_Contig1782
Length = 24703
Score = 1281 bits (646), Expect = 0.0
Identities = 740/765 (96%), Gaps = 5/765 (0%)
Strand = Plus / Plus
Query: 48 tatccttacttggttgtttgcaatgagtttttggggctcttaacatggactagcgacgat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4217 tatccttacttggttgtttgcaatgagtttttggggctcttaacatggactagcgacgat 4276
Query: 108 atttggaagagcgtattgatggttatatgctacatcgcagtaatcttgtatttccaagtg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4277 atttggaagagcgtattgatggttatatgctacatcgcagtaatcttgtatttccaagtg 4336
Query: 168 gtggtaaggtactttggccatttcttgtttgtcggattgttatggggatattctgctttg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4337 gtggtaaggtactttggccatttcttgtttgtcggattgttatggggatattctgctttg 4396
Query: 228 gatacttttgtggaaactaccattaaggaaaagcctacactagatgacattgtgcatatc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4397 gatacttttgtggaaactaccattaaggaaaagcctacactagatgacattgtgcatatc 4456
Query: 288 atttcttgtgtgtacacgaaggctgatttattactttcgcccttgtccgtatggacggga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4457 atttcttgtgtgtacacgaaggctgatttattactttcgcccttgtccgtatggacggga 4516
Query: 348 aacgatattaagcggatacttttgacgatggcgtttctttcgcctgtctatgtaattgtg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4517 aacgatattaagcggatacttttgacgatggcgtttctttcgcctgtctatgtaattgtg 4576
Query: 408 tcaatattcatcttctcatcacagaaattggtattgatcgctggtgtttacgtgctcacg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4577 tcaatattcatcttctcatcacagaaattggtattgatcgctggtgtttacgtgctcacg 4636
Query: 468 taccattcatcatggtctgtagtcactagaagattattgtggaaattaaaggttgtccgg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4637 taccattcatcatggtctgtagtcactagaagattattgtggaaattaaaggttgtccgg 4696
Query: 528 ttacttgtcttttacataaaccgtcttgatttgagtggtgttaacaagcatcaaggtgga 587
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 4697 ttacttgtcttttacataaccggtcttgatttgagtggtgttaacaagcatcaaggtgga 4756
Query: 588 atcttcgctgcagtgcataagaaagtcaagaatctttcatcgagctcgattggaaccgat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4757 atcttcgctgcagtgcataagaaagtcaagaatctttcatcgagctcgattggaaccgat 4816
Query: 648 gcagatgatgggaaaaccatttagattcacttattgta-tatatgagaaacagnagacgt 706
||||||||||||||| ||| ||||||||||||| |||| |||||||||| ||| ||||||
Sbjct: 4817 gcagatgatgggaaaccca-ttagattcactta-tgtattatatgagaaccag-agacgt 4873
Query: 707 tgccttcgtaattggctgaactgncaacattttgacttaccagagaagttaatgtacaga 766
|| | ||| |||||||| |||| |||||| ||||||||| ||||||||| ||| |||||
Sbjct: 4874 tggc-tcggtattggctggactgccaacatgttgacttacgagagaagttcatggacaga 4932
Query: 767 tgaatttttaaaccaggcaccattttcagacacatttaaacttcc 811
||| ||||||||| ||||||||| | |||| ||||||||||||
Sbjct: 4933 tgagtttttaaacgaggcaccatctccagaacaatttaaacttcc 4977
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6148
Number of Sequences: 1807
Number of extensions: 6148
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)