BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC45ZH10RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1804 1419 0.0
>3x_Contig1804
Length = 51183
Score = 1419 bits (716), Expect = 0.0
Identities = 767/780 (98%), Gaps = 3/780 (0%)
Strand = Plus / Minus
Query: 52 agttcctgcacgttggagcacaactatatttgtgattggtgatgttttaagtttctttgt 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46663 agttcctgcacgttggagcacaactatatttgtgattggtgatgttttaagtttctttgt 46604
Query: 112 gcagggtgcaggtgccggtatcatggccaatgctgacacgtcaagtgaatcaaaaactgg 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46603 gcagggtgcaggtgccggtatcatggccaatgctgacacgtcaagtgaatcaaaaactgg 46544
Query: 172 gtccaacatcatcgttgttggattattcgtgcaggttgcagtcttcggttttttcatgat 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46543 gtccaacatcatcgttgttggattattcgtgcaggttgcagtcttcggttttttcatgat 46484
Query: 232 cacagagctacgtttcttgcttcgagtaaagcgcactagcgctattgttccgtacctttc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46483 cacagagctacgtttcttgcttcgagtaaagcgcactagcgctattgttccgtacctttc 46424
Query: 292 acttcactggagaacgctcaacttaacacttctgggcatcagtttactaattctgatcag 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46423 acttcactggagaacgctcaacttaacacttctgggcatcagtttactaattctgatcag 46364
Query: 352 gtctcttgtacgtgccattgaatttattcaaggtaataaaggcttcattatcagtcacga 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46363 gtctcttgtacgtgccattgaatttattcaaggtaataaaggcttcattatcagtcacga 46304
Query: 412 gtacttcttgtacgtgtttgacgcgctaatgatgattcttgcttcattggtatggatcgt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46303 gtacttcttgtacgtgtttgacgcgctaatgatgattcttgcttcattggtatggatcgt 46244
Query: 472 tactttcaaatttggagacatatttaagatcatttatgaggtcaaactccttgattcttt 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46243 tactttcaaatttggagacatatttaagatcatttatgaggtcaaactccttgattcttt 46184
Query: 532 caaggagaagagtggtgatgatgccagctatatgcaaactgaagcttttgataaaaagtg 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46183 caaggagaagagtggtgatgatgccagctatatgcaaactgaagcttttgataaaaagtg 46124
Query: 592 aacaaaggcccaagtaaagttcgtgtatgtttttgaaatggactttgatatccaagtatg 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46123 aacaaaggcccaagtaaagttcgtgtatgtttttgaaatggactttgatatccaagtatg 46064
Query: 652 atattgtgagacgaatttttatgtaattgcagcagatac-ttagaaacaaattgaat-aa 709
||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| ||
Sbjct: 46063 atattgtgagacgaatttttatgtagttgcagcagatacataagaaacaaattgaataaa 46004
Query: 710 tgtcatattactattttctgactaattctaaaaggattatccgatcgcgatattttgact 769
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 46003 tgtcatattactattttctgactaattcttaaaggattatccgatcgcgatattttgact 45944
Query: 770 tacaacatcagcagtcaaaaattgttccactactgaa-caccatttcaaattggcaacgg 828
||||||||||||||| ||||||||||| ||||||| ||| ||| |||||| |||||||
Sbjct: 45943 accaacatcagcagtcagaaattgttccagtactgaaccacgattccaaatttgcaacgg 45884
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6783
Number of Sequences: 1807
Number of extensions: 6783
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)