BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC46ZA02FM1.SCF screened BAC_end
         (945 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1337                                                        1080   0.0  

>3x_Contig1337 
          Length = 7771

 Score = 1080 bits (545), Expect = 0.0
 Identities = 644/665 (96%), Gaps = 9/665 (1%)
 Strand = Plus / Plus

                                                                        
Query: 88   tacgttttattcacttttttataagcacttcttcgcagttttctgtatttagtttttaga 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3233 tacgttttattcacttttttataagcacttcttcgcagttttctgtatttagtttttaga 3292

                                                                        
Query: 148  gaaacaatattggaacaagtgtcagacacattgcttgagctgttggttggtttttgtttg 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3293 gaaacaatattggaacaagtgtcagacacattgcttgagctgttggttggtttttgtttg 3352

                                                                        
Query: 208  cactcgcagtatctatttgaattctcatagacgtttttcaaagaaaataaagttgaggtg 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3353 cactcgcagtatctatttgaattctcatagacgtttttcaaagaaaataaagttgaggtg 3412

                                                                        
Query: 268  attttttgagaagtgaaaccaagggaacaaacctggaataagtggggaacaaaacacaag 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3413 attttttgagaagtgaaaccaagggaacaaacctggaataagtggggaacaaaacacaag 3472

                                                                        
Query: 328  aacggttttatttgtagatattggtttatcagcagtactgctctgctatacaattttaac 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3473 aacggttttatttgtagatattggtttatcagcagtactgctctgctatacaattttaac 3532

                                                                        
Query: 388  tatttggtaaaaataagaccagaattacaatatatttatacatattcagaaactagaact 447
            ||||||||||||||||||||||||| ||||||||||   |||||||||||||||||||||
Sbjct: 3533 tatttggtaaaaataagaccagaataacaatatattataacatattcagaaactagaact 3592

                                                                        
Query: 448  acatgtccgtggttgcaattaaaaacgctgtgtcaaaactcgtagcgaaaaatcaggaag 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3593 acatgtccgtggttgcaattaaaaacgctgtgtcaaaactcgtagcgaaaaatcaggaag 3652

                                                                        
Query: 508  ttccattactatcatccgatagttctaattccatttcgaattcta-cactaatttg-ata 565
            ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct: 3653 ttccattactatcatccgatagttctaattccaattcgaattctaccactaatttgaata 3712

                                                                        
Query: 566  gtcatcgatactcggcttca-cacaggatggcgatatagaattctc-aagcataca-gtg 622
            |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| |||
Sbjct: 3713 gtcatcgatactcggcttcaccacaggatggcgatatagaatcctcaaagcatacaggtg 3772

                                                                        
Query: 623  ggtttgacgattattgacattga-gatgatggtacttctggattgttcggtaagattgat 681
            ||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 3773 ggtttgacgatta-tgacaatgaggatgatggtacgtctggattgttcggtaagattgat 3831

                                                                        
Query: 682  ccaagagttatttcccatttgattatcggactca-tgattggtttgacggttcctttcgg 740
            ||||||||||| ||| || ||||||||||||||| ||| |||||||||||||||||||| 
Sbjct: 3832 ccaagagttatgtccgatatgattatcggactcagtga-tggtttgacggttcctttcgc 3890

                 
Query: 741  gttga 745
            |||||
Sbjct: 3891 gttga 3895


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8540
Number of Sequences: 1807
Number of extensions: 8540
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)