BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC46ZA02FM1.SCF screened BAC_end (945 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1337 1080 0.0 >3x_Contig1337 Length = 7771 Score = 1080 bits (545), Expect = 0.0 Identities = 644/665 (96%), Gaps = 9/665 (1%) Strand = Plus / Plus Query: 88 tacgttttattcacttttttataagcacttcttcgcagttttctgtatttagtttttaga 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3233 tacgttttattcacttttttataagcacttcttcgcagttttctgtatttagtttttaga 3292 Query: 148 gaaacaatattggaacaagtgtcagacacattgcttgagctgttggttggtttttgtttg 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3293 gaaacaatattggaacaagtgtcagacacattgcttgagctgttggttggtttttgtttg 3352 Query: 208 cactcgcagtatctatttgaattctcatagacgtttttcaaagaaaataaagttgaggtg 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3353 cactcgcagtatctatttgaattctcatagacgtttttcaaagaaaataaagttgaggtg 3412 Query: 268 attttttgagaagtgaaaccaagggaacaaacctggaataagtggggaacaaaacacaag 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3413 attttttgagaagtgaaaccaagggaacaaacctggaataagtggggaacaaaacacaag 3472 Query: 328 aacggttttatttgtagatattggtttatcagcagtactgctctgctatacaattttaac 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3473 aacggttttatttgtagatattggtttatcagcagtactgctctgctatacaattttaac 3532 Query: 388 tatttggtaaaaataagaccagaattacaatatatttatacatattcagaaactagaact 447 ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 3533 tatttggtaaaaataagaccagaataacaatatattataacatattcagaaactagaact 3592 Query: 448 acatgtccgtggttgcaattaaaaacgctgtgtcaaaactcgtagcgaaaaatcaggaag 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3593 acatgtccgtggttgcaattaaaaacgctgtgtcaaaactcgtagcgaaaaatcaggaag 3652 Query: 508 ttccattactatcatccgatagttctaattccatttcgaattcta-cactaatttg-ata 565 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| Sbjct: 3653 ttccattactatcatccgatagttctaattccaattcgaattctaccactaatttgaata 3712 Query: 566 gtcatcgatactcggcttca-cacaggatggcgatatagaattctc-aagcataca-gtg 622 |||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| ||| Sbjct: 3713 gtcatcgatactcggcttcaccacaggatggcgatatagaatcctcaaagcatacaggtg 3772 Query: 623 ggtttgacgattattgacattga-gatgatggtacttctggattgttcggtaagattgat 681 ||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||| Sbjct: 3773 ggtttgacgatta-tgacaatgaggatgatggtacgtctggattgttcggtaagattgat 3831 Query: 682 ccaagagttatttcccatttgattatcggactca-tgattggtttgacggttcctttcgg 740 ||||||||||| ||| || ||||||||||||||| ||| |||||||||||||||||||| Sbjct: 3832 ccaagagttatgtccgatatgattatcggactcagtga-tggtttgacggttcctttcgc 3890 Query: 741 gttga 745 ||||| Sbjct: 3891 gttga 3895 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8540 Number of Sequences: 1807 Number of extensions: 8540 Number of successful extensions: 60 Number of sequences better than 1.0e-20: 1 length of query: 945 length of database: 10,358,551 effective HSP length: 16 effective length of query: 929 effective length of database: 10,329,639 effective search space: 9596234631 effective search space used: 9596234631 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)