BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZA02RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1502 1515 0.0
>3x_Contig1502
Length = 14970
Score = 1515 bits (764), Expect = 0.0
Identities = 865/886 (97%), Gaps = 10/886 (1%)
Strand = Plus / Minus
Query: 53 aagtaaattatcattccccagtgactgagagattctacgagattgagcttggctagatct 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2582 aagtaaattatcattccccagtgactgagagattctacgagattgagcttggctagatct 2523
Query: 113 caggaaatcgtcagtaaagagagcagagtatgagcttgcagaatttttcctattcgaagg 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2522 caggaaatcgtcagtaaagagagcagagtatgagcttgcagaatttttcctattcgaagg 2463
Query: 173 tacagatattttaattggttctgaagtgtcattaggatctaagctaataggtggtggtgt 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2462 tacagatattttaattggttctgaagtgtcattaggatctaagctaataggtggtggtgt 2403
Query: 233 tgatctcttagagctttctccgcttggcctgaatggaaccctaaataccatgccaccgga 292
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 2402 tgatctcttagagctttctccgcttggcctgaatggaaccctaaataccatggcagcgga 2343
Query: 293 tgaactcgttacacctgaagcagcgtttgaatgacgtctctgagaagactgctccgatat 352
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2342 tgaactggttacacctgaagcagcgtttgaatgacgtctctgagaagactgctccgatat 2283
Query: 353 ttctcccaaagagactatatgatcaggatttactcccaaagaggtaggtaatctgtcgtt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2282 ttctcccaaagagactatatgatcaggatttactcccaaagaggtaggtaatctgtcgtt 2223
Query: 413 ggcgttagtagcggttgctaagctatctgaatgagaagctatcgaatgagacgagttatc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2222 ggcgttagtagcggttgctaagctatctgaatgagaagctatcgaatgagacgagttatc 2163
Query: 473 atttgttaatttagatgtgcttggcgtattgaagaataagcaagcggatttcctttccat 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2162 atttgttaatttagatgtgcttggcgtattgaagaataagcaagcggatttcctttccat 2103
Query: 533 tggaggcgtgctgctttgcacagactgtgcacttggtctgtggcggctaaaaaatgtgtc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2102 tggaggcgtgctgctttgcacagactgtgcacttggtctgtggcggctaaaaaatgtgtc 2043
Query: 593 caaagatccttgtgatgttggcttcttgtcatccttagctatggaagatattgaactaga 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2042 caaagatccttgtgatgttggcttcttgtcatccttagctatggaagatattgaactaga 1983
Query: 653 tgtatgcggcgagacgcctaactgccctacgtttnctgaagaaagttttgaaatctggga 712
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1982 tgtatgcggcgagacgcctaactgccctacgtttcctgaagaaagttttgaaatctggga 1923
Query: 713 aaagctttccggtattttgcgatctgttgaaactttgaacat-agcattagccaaaagct 771
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 1922 aaagctttccggtattttgcgatctgttgaaac-ttgaacataagcattagccaaaagca 1864
Query: 772 aatcgaagtacctaccccatctctttcttagtaaaaaacttggaacggcgacaggatccg 831
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||
Sbjct: 1863 tatcgaagtacctaccccatctctttctaagtaaaaaacttggaacggcgaca-gattcg 1805
Query: 832 tcatctttccgttatgaaactcaaaatctgctagtaggcttgnntgtagactttccaaag 891
||||| |||||||||| ||||||||||||||||||| ||||| ||||||| ||||||||
Sbjct: 1804 tcatc-ttccgttatg-aactcaaaatctgctagta-gcttg-ttgtagac-ttccaaag 1750
Query: 892 aatctttaccttaaaaccattgaataagaaggggaggacggatctt 937
|||||||||| ||||||||||||||||| | |||| ||||||||||
Sbjct: 1749 aatctttacc-taaaaccattgaataag-atgggaagacggatctt 1706
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5622
Number of Sequences: 1807
Number of extensions: 5622
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)