BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZA03FM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1625 1201 0.0
>3x_Contig1625
Length = 13618
Score = 1201 bits (606), Expect = 0.0
Identities = 685/704 (97%), Gaps = 6/704 (0%)
Strand = Plus / Minus
Query: 90 acgtagcatgatttattcagttgactattcgggacgagattcctcctatgagaattcaaa 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5888 acgtagcatgatttattcagttgactattcgggacgagattcctcctatgagaattcaaa 5829
Query: 150 tattcaattacctatgcttcctatgactgagcttaatgatgcagaattaactataaatga 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5828 tattcaattacctatgcttcctatgactgagcttaatgatgcagaattaactataaatga 5769
Query: 210 atcaaaagccttatggagatttaatttagagtttggcggaaattatgacattagagaatt 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5768 atcaaaagccttatggagatttaatttagagtttggcggaaattatgacattagagaatt 5709
Query: 270 accagaaggtatgcagacagtgaaagatatagagaatattgtcaaatgtgcaaaaactgt 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5708 accagaaggtatgcagacagtgaaagatatagagaatattgtcaaatgtgcaaaaactgt 5649
Query: 330 taatgaattcaagctgcagatttcgcagcgtttattggaatggaaaaacagatatgtcaa 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5648 taatgaattcaagctgcagatttcgcagcgtttattggaatggaaaaacagatatgtcaa 5589
Query: 390 tcacaagattctcaatatgaaatctttgataactttcctcacgatacctattaggcttca 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5588 tcacaagattctcaatatgaaatctttgataactttcctcacgatacctattaggcttca 5529
Query: 450 tgaacccaatgagttcaaattgaggttacaggaattcacattccaagcgttcgaattcaa 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5528 tgaacccaatgagttcaaattgaggttacaggaattcacattccaagcgttcgaattcaa 5469
Query: 510 cgaaagggtggaatatcaattc-anaaatcaaaaacgaacgaactggaatcacctgtact 568
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 5468 cgaaagggtggaatatcaattcaaaaaatcaaaaacgaacgaactggaatcacctgtact 5409
Query: 569 ctcaaaagattttaa-acacaccgacagncatgccttggttgataacggtattataccct 627
||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 5408 ctcaaaagattttaacaca-accgacagcaatgccttggttgataacggtattataccct 5350
Query: 628 cagaatcccttctatactttggtttctatgaaacacaaactagccacttattgtgctatc 687
|||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 5349 cagaattccttctatac-ttggtttctatgaaacacaaactagccactaattgtgctatc 5291
Query: 688 tacgagttgtcgatgaaagcagccatagcgtttcatgattacgaacttgctatgacaact 747
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5290 tacgaagtgtcgatgaaagcagccatagcgttccatgattacgaacttgctatgacaaca 5231
Query: 748 tggaggaacaga-gttaattca-aatgactgacccttttcagaa 789
|||| ||||||| || |||||| |||||||||| |||| |||||
Sbjct: 5230 tggaagaacagaggtaaattcagaatgactgacgctttccagaa 5187
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6862
Number of Sequences: 1807
Number of extensions: 6862
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)