BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZA03RM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1520 1671 0.0
>3x_Contig1520
Length = 10750
Score = 1671 bits (843), Expect = 0.0
Identities = 877/883 (99%), Gaps = 4/883 (0%)
Strand = Plus / Minus
Query: 47 tttagcatgtgtatgggcttcatgaaacaaaatccacgtgacctcaaattactttacgta 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 tttagcatgtgtatgggcttcatgaaacaaaatccacgtgacctcaaattactttacgta 919
Query: 107 tcaattcccttttctgatctctaattgttttgtaaacaaaaaaaaaacataaacatcaag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 tcaattcccttttctgatctctaattgttttgtaaacaaaaaaaaaacataaacatcaag 859
Query: 167 aacaactggaatcaataacaaacactagcggtctcaattgcatgaataaattcaattgaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 aacaactggaatcaataacaaacactagcggtctcaattgcatgaataaattcaattgaa 799
Query: 227 gagcattgatattgacttctggttccaataacgtagcctcattgaccaaattacaggtaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gagcattgatattgacttctggttccaataacgtagcctcattgaccaaattacaggtaa 739
Query: 287 actcaatttgggtacgaggctgttaggaaaacatgagtcaacagagggaaaaagtatggg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 actcaatttgggtacgaggctgttaggaaaacatgagtcaacagagggaaaaagtatggg 679
Query: 347 tatctgatgaacgagaggtttttgttcaaggtcaattggtagagcggaaagtggttaaga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tatctgatgaacgagaggtttttgttcaaggtcaattggtagagcggaaagtggttaaga 619
Query: 407 ataagcaaggccaggaacaagcggttgctgtggttagtgtgaatggtaaggaaacagagt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ataagcaaggccaggaacaagcggttgctgtggttagtgtgaatggtaaggaaacagagt 559
Query: 467 tttccgaagacgatgtagcctcggtgaatccttctacctttgataaagtggacgacttgt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tttccgaagacgatgtagcctcggtgaatccttctacctttgataaagtggacgacttgt 499
Query: 527 ctgaattgacgcatcttaatgaagcttctgttcttttcaatttacagaacaggtaccaag 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctgaattgacgcatcttaatgaagcttctgttcttttcaatttacagaacaggtaccaag 439
Query: 587 atgatttgatttacacttattcaggattatttttagtggccattaacccatacagtaata 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atgatttgatttacacttattcaggattatttttagtggccattaacccatacagtaata 379
Query: 647 tcaagatatatagtaacagctatatcaaattataccatggatctccgaaggaggataata 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tcaagatatatagtaacagctatatcaaattataccatggatctccgaaggaggataata 319
Query: 707 aaccgcatatcttcgctgtcgctgaacaggcttaccagaatcttttgcatcaaaagcagg 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaccgcatatcttcgctgtcgctgaacaggcttaccagaatcttttgcatcaaaagcagg 259
Query: 767 atcaatcgatcttggttaccggtgagtcaggtgctggtaaaacagag-atac-caaaaaa 824
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 258 atcaatcgatcttggttaccggtgagtcaggtgctggtaaaacagagaatacaaaaaaaa 199
Query: 825 tcttacaatatttggcattcattacgacggatgataagattttattaaatcagacgaacg 884
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tcttacaatatttggcatccattacgacggatgataagattttattaaatcagacgaacg 139
Query: 885 aatcgtttgaaagg-aaatcttacaatc-aacccaattttaga 925
|||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 138 aatcgtttgaaaggaaaatcttacaatcaaacccaattttaga 96
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8784
Number of Sequences: 1807
Number of extensions: 8784
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)