BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZA04FM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig672 642 0.0
>3x_Contig672
Length = 2319
Score = 642 bits (324), Expect = 0.0
Identities = 441/472 (93%), Gaps = 6/472 (1%)
Strand = Plus / Plus
Query: 87 cggtgacgattctactgacggtacgtccatgttaacgtccccatcttcatctttcatttc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1393 cggtgacgattctactgacggtacgtccatgttaacgtccccatcttcatctttcatttc 1452
Query: 147 atgtgaatcagatacgccttcattgaccacagtggtagttttttcatcaacattctgaat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1453 atgtgaatcagatacgccttcattgaccacagtggtagttttttcatcaacattctgaat 1512
Query: 207 agcgctgtcatcattatcttcttcttgaatagcgttattacttttagaactgttttctcg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1513 agcgctgtcatcattatcttcttcttgaatagcgttattacttttagaactgttttctcg 1572
Query: 267 agaaatttccttgaggagtgtctcttcatgtatgtctgcaaatttggtacccgtaccttt 326
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 1573 agaaatttcctcgaggagtgtctcttcatgtatgtctgcaaatttggtaccagtacctct 1632
Query: 327 ttgttgcaacatcagtggaaattaactgctcaagcggcatctgaccaaagtactcatacc 386
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1633 ctgttgcaacatcagtgg-aataaactgctcaagcggcatctgaccaaagtactcatacg 1691
Query: 387 ggttctgaattaatgatttttgcgacttttcaatattagcattgttagctgcaaatcctg 446
||||||||||||||||||||||||||||| || ||| ||||| || |||||||||| |||
Sbjct: 1692 ggttctgaattaatgatttttgcgactttgcattatcagcatcgtcagctgcaaatactg 1751
Query: 447 tggcattttaattgttaacacctttcgt-accggtaccaataattctttaatgaagaaaa 505
|||||| || |||||||||||| ||||| |||| |||| || | || ||||||||| | |
Sbjct: 1752 tggcatcttcattgttaacacc-ttcgtcaccgttacc-attagtcgttaatgaagtaga 1809
Query: 506 caccggaattcttattaaatttggaatcaattgcccaaggttttaccctttt 557
||||||||| || |||||||| || |||||||| |||||| | |||||||||
Sbjct: 1810 caccggaatactaattaaattagg-atcaattg-ccaagggtataccctttt 1859
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,677
Number of Sequences: 1807
Number of extensions: 11677
Number of successful extensions: 125
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)