BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZA05FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1062 1277 0.0
>3x_Contig1062
Length = 5564
Score = 1277 bits (644), Expect = 0.0
Identities = 714/731 (97%), Gaps = 5/731 (0%)
Strand = Plus / Plus
Query: 89 acaatttgagatcaaaaagtattggcaaattttctccggattgaaaccggtggaaaataa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2267 acaatttgagatcaaaaagtattggcaaattttctccggattgaaaccggtggaaaataa 2326
Query: 149 gttgacccatgatcaagtactgcctatccttttcaattctaaattggacacctcgatact 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2327 gttgacccatgatcaagtactgcctatccttttcaattctaaattggacacctcgatact 2386
Query: 209 taacaaaatatggtttttggccgatatcgatgatgatgatcaactagattttgaagagtt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2387 taacaaaatatggtttttggccgatatcgatgatgatgatcaactagattttgaagagtt 2446
Query: 269 tgtgatttgtatgagaatgatatttgacatggttaataaaaacatagattctgtaccaga 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2447 tgtgatttgtatgagaatgatatttgacatggttaataaaaacatagattctgtaccaga 2506
Query: 329 tgaattgccagattggttgattcccggttcaaaagccgaattagtcaaacaaagaaaaac 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2507 tgaattgccagattggttgattcccggttcaaaagccgaattagtcaaacaaagaaaaac 2566
Query: 389 tgaacgtagtagcggaacagcagaaacaagttctgtggtcaatgttccgacatcttcgcc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2567 tgaacgtagtagcggaacagcagaaacaagttctgtggtcaatgttccgacatcttcgcc 2626
Query: 449 agctgtagacgattatcaaaaagaagttgattggtatatatcaagagatgataagtcaca 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2627 agctgtagacgattatcaaaaagaagttgattggtatatatcaagagatgataagtcaca 2686
Query: 509 atacgaatcaatttatgaatcagccataacctctagagacaatagtgtatcttatgtttc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2687 atacgaatcaatttatgaatcagccataacctctagagacaatagtgtatcttatgtttc 2746
Query: 569 actatcctccgccgttagatcgaagtatatcaatctatcatctcaagatttagaaaaaac 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2747 actatcctccgccgttagatcgaagtatatcaatctatcatctcaagatttagaaaaaac 2806
Query: 629 gtgggcgtttggttaatcctaagcttgacacttccatagattanggatccagcactatac 688
|| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 2807 gt-ggcgtttggttaatcctaagcttgacacttccataga-taaggatccagcactatac 2864
Query: 689 ttttattcatattctgagaacagtgaacgactatgctttgccaataccattacattttac 748
|||||||||||||||||| ||||||||||||||||| |||||||||| ||| |||||
Sbjct: 2865 -tttattcatattctgagacaagtgaacgactatgcttgcccaataccatcaca-tttac 2922
Query: 749 tttaggcattgaaagaaacttttacaaagactagagttttcacggatttgtttcccaagc 808
|| |||||||||||||||||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 2923 cttcagcattgaaagaaacttttacaaagactagagtttccacggatttgtcttccaagc 2982
Query: 809 -gagcgaagta 818
||||||||||
Sbjct: 2983 agagcgaagta 2993
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,036
Number of Sequences: 1807
Number of extensions: 13036
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)