BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZA05RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig858 1526 0.0
>3x_Contig858
Length = 3029
Score = 1526 bits (770), Expect = 0.0
Identities = 845/865 (97%), Gaps = 6/865 (0%)
Strand = Plus / Plus
Query: 49 tgatgttgaatccatcacttaaaatagtttgtacttcctccaattctagaccagatagtt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 tgatgttgaatccatcacttaaaatagtttgtacttcctccaattctagaccagatagtt 1408
Query: 109 ctggataacagagataacagaagacggtagatactgcagctagtgcagcaaataatgaaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 ctggataacagagataacagaagacggtagatactgcagctagtgcagcaaataatgaaa 1468
Query: 169 atgtaccagtcggtgttatgttttgtaacattgttaggaaggtagatgcaataattaggg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1469 atgtaccagtcggtgttatgttttgtaacattgttaggaaggtagatgcaataattaggg 1528
Query: 229 aaccagcccagttagtagctgtacaataagaagtacctacacctctaacggatgttgcaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1529 aaccagcccagttagtagctgtacaataagaagtacctacacctctaacggatgttgcaa 1588
Query: 289 ataattcagattgctgccatggtacagtaccgatacctagagcatagaatgctgcatata 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1589 ataattcagattgctgccatggtacagtaccgatacctagagcatagaatgctgcatata 1648
Query: 349 ccatgatgaatacgataacgactataccccaagaactgaatccaccattggaaacttccg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1649 ccatgatgaatacgataacgactataccccaagaactgaatccaccattggaaacttccg 1708
Query: 409 attcaccagcgccagtgaattttatatctaggaaatggaaggcgatagcacacataacca 468
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1709 attcaccagcgccagtgaatttcatatctaggaaatggaaggcgatagcacacataacca 1768
Query: 469 aggaaaccatcataccaggcaagccaatcaaaaggattgctctacgaccgaccttatcaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1769 aggaaaccatcataccaggcaagccaatcaaaaggattgctctacgaccgaccttatcaa 1828
Query: 529 tcgcaaagaaagcgactaaagtgaatacgaagttagtaccggcaacgatgatagacactg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1829 tcgcaaagaaagcgactaaagtgaatacgaagttagtaccggcaacgatgatagacactg 1888
Query: 589 cagtagaattttcgaaaccaacagtttgaaaaatagtaccagagaaatacattaaagaat 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1889 cagtagaattttcgaaaccaacagtttgaaaaatagtaccagagaaatacattaaagaat 1948
Query: 649 tccaaccacagaattgttgaataccttgntaagcacaaccgatcaccaatgccctgaaat 708
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1949 tccaaccacagaattgttgaataccttgtaaagcacaaccgatcaccaatgccctgaaat 2008
Query: 709 tgcatgggacagtatgtaattctttgacagtgttgaagaacttgtgtacaggggtcttac 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2009 tgcatgggacagtatgtaattctttgacagtgttgaagaacttgtgtacaggggtcttac 2068
Query: 769 ctgngatagcctcattc-aatctgatangtcacggattntttgatcgantagntcctggg 827
||| ||||||||||||| ||||||||| ||||||||| ||||||||| || |||||||
Sbjct: 2069 ctgggatagcctcattcaaatctgatagttcacggattttttgatcgataagttcctggg 2128
Query: 828 gagcg-taatgtaaactc-tttgtaaaacttctgcagccttcctatagntacc-tttatc 884
||||| |||||| ||||| ||||||||||||||||||||||| ||||| |||| ||||||
Sbjct: 2129 gagcgttaatgt-aactcttttgtaaaacttctgcagccttcttatagttaccttttatc 2187
Query: 885 acgtanaancgcgga-tgtctggca 908
||||| || |||||| |||||||||
Sbjct: 2188 acgtagaaacgcggagtgtctggca 2212
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5518
Number of Sequences: 1807
Number of extensions: 5518
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)