BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZA06FM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1085 311 1e-84
>3x_Contig1085
Length = 5008
Score = 311 bits (157), Expect = 1e-84
Identities = 288/324 (88%), Gaps = 6/324 (1%)
Strand = Plus / Minus
Query: 494 aagcatgtgaaccaaccagttccaagatgatatgaaaacccaaacgaatcaagttcgttc 553
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5008 aagcatgtgaaccaaccagttccaagatgatatgaaa-cccaaacgaatcaagttcgttc 4950
Query: 554 gaaatcttttgacgaatgttgattgatagtatagtaaagtttatgactgctactaaagag 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4949 gaaatcttttgacgaatgttgattgatagtatagtaaagtttatgactgctactaaagag 4890
Query: 614 caaataaacacaaatagtttcattagtgattatag-atgcanggagatttttggtttcat 672
||||||||||| ||||||||||||||||| ||||| ||||| | |||||| | |||||
Sbjct: 4889 caaataaacaccaatagtttcattagtga-tatagaatgcaggaggattttggttttca- 4832
Query: 673 tggtttgttcaggtctattcctgaaccaggggtacagaacattcgatcccaatttgaaaa 732
|||||||||||||||||||||||| | | ||||| ||| ||||||||||| ||||||
Sbjct: 4831 tggtttgttcaggtctattcctgatcatgtagtacaagacaatcgatcccaatatgaaaa 4772
Query: 733 cttcc-attctgccccgaactaaaatagatgtgccctgttgacttttttttttgacaaaa 791
||||| || ||||| ||| |||| ||||| || ||||||||||| || | ||||||
Sbjct: 4771 cttccaatactgccacgacgtaaagtagattgaccatgttgacttttcttctcgacaaag 4712
Query: 792 ca-cccaaaatttgttgttttttg 814
|| || |||||||||||| |||||
Sbjct: 4711 cagccaaaaatttgttgtattttg 4688
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8672
Number of Sequences: 1807
Number of extensions: 8672
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)