BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZA06RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1610 1388 0.0
>3x_Contig1610
Length = 13981
Score = 1388 bits (700), Expect = 0.0
Identities = 802/820 (97%), Gaps = 12/820 (1%)
Strand = Plus / Minus
Query: 48 ggaataagcaaaaaataagaaaaagctgtgtagcatcttgtaaagcgcgtttgtgctacg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3273 ggaataagcaaaaaataagaaaaagctgtgtagcatcttgtaaagcgcgtttgtgctacg 3214
Query: 108 atttggagtggaatcagatggaaagtaaaagagtctgttacccggatatattgcctagaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3213 atttggagtggaatcagatggaaagtaaaagagtctgttacccggatatattgcctagaa 3154
Query: 168 aacaatgtatgaaccccataaatgaagagaaaaatagggatcgtgctcctgtttaacgga 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3153 aacaatgtatgaaccccataaatgaagagaaaaatagggatcgtgctcctgtttaacgga 3094
Query: 228 gggtaacttatatactgctagggaagaaagaattttttgccactcaactgcaaatagccg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3093 gggtaacttatatactgctagggaagaaagaattttttgccactcaactgcaaatagccg 3034
Query: 288 ggtaaatagttggcgttagcttgttcacgtgacttgtaattcgtgtttcaaaccgagtaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3033 ggtaaatagttggcgttagcttgttcacgtgacttgtaattcgtgtttcaaaccgagtaa 2974
Query: 348 taagggtattatcattagctatatggatcaaggataatatatatgtagatatagatagtt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2973 taagggtattatcattagctatatggatcaaggataatatatatgtagatatagatagtt 2914
Query: 408 agttagatgatgcaataacttgcgagaccatccagctctatggggcgtatttcttgatca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2913 agttagatgatgcaataacttgcgagaccatccagctctatggggcgtatttcttgatca 2854
Query: 468 attggtcaaccaattcgatgtactgttgttcggcatcttcttgggaagtgcccttcaaca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2853 attggtcaaccaattcgatgtactgttgttcggcatcttcttgggaagtgcccttcaaca 2794
Query: 528 attcccaggcgtcccacttgtaacggtccttcaagttgaacatgcctggtttttccttgg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2793 attcccaggcgtcccacttgtaacggtccttcaagttgaacatgcctggtttttccttgg 2734
Query: 588 tgttgtcaccgacggttgcttgcttgtatagagcatacaatttcaacaattcatcgttat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2733 tgttgtcaccgacggttgcttgcttgtatagagcatacaatttcaacaattcatcgttat 2674
Query: 648 ttggagttgatggcaattcattgacagctttagcctgcnagat-aatgtaagatgcggtt 706
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 2673 ttggagttgatggcaattcattgacagctttagcctgc-agataaatgtaagatgcggtt 2615
Query: 707 agtatgattattaaggggaatc-aaagccatttgcac-acgatt-cacataccttttc-t 762
||||||||||||||||| |||| ||||||||| || |||||| ||||||||||||| |
Sbjct: 2614 agtatgattattaagggaaatcaaaagccattgcaacaacgattccacataccttttctt 2555
Query: 763 cgaat-attgagaaacca-tgtgttttgagtgagtgtcgatatctgacgtattg-actaa 819
||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2554 cgaataattgagaaaccattgtgttttgagtgagtgtcgatatctgacgtattgaactaa 2495
Query: 820 cac-tgtcttt-acaattcttcg-ttagtaccatgtgtaa 856
||| ||||||| |||| || ||| ||||||||||||||||
Sbjct: 2494 cacttgtctttcacaaatcctcgtttagtaccatgtgtaa 2455
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7184
Number of Sequences: 1807
Number of extensions: 7184
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)