BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZA07FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1649 839 0.0
>3x_Contig1649
Length = 14442
Score = 839 bits (423), Expect = 0.0
Identities = 518/543 (95%), Gaps = 5/543 (0%)
Strand = Plus / Minus
Query: 87 ggaggcaaaatatcatgaggcgaaaacttctttgacaaatcgttctacacagattgctga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13033 ggaggcaaaatatcatgaggcgaaaacttctttgacaaatcgttctacacagattgctga 12974
Query: 147 agtcggaggacacatagaaaccgacttagaattactaggagctactgccatagaagacaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12973 agtcggaggacacatagaaaccgacttagaattactaggagctactgccatagaagacaa 12914
Query: 207 gctacaggaaggcgttccagaagcaattcaaaaaataagaagggctggaattaagatgtg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12913 gctacaggaaggcgttccagaagcaattcaaaaaataagaagggctggaattaagatgtg 12854
Query: 267 gatgctaactggtgacaagcgtgaaacagcaatcaatattggatatgcttgtaagctcat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12853 gatgctaactggtgacaagcgtgaaacagcaatcaatattggatatgcttgtaagctcat 12794
Query: 327 ttacgattattcaactgttgttatcttgaaaaaaaatgaccacaacttaatctcaaaaat 386
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 12793 ttacgattattcaactgttgttatcttgaaaaaaaatgacgacaacttaatctcaaaaat 12734
Query: 387 gacagctttaggagaagaacttgacacaggaaaaatagcacactgtgtgttagtgattga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12733 gacagctttaggagaagaacttgacacaggaaaaatagcacactgtgtgttagtgattga 12674
Query: 447 cggtgcattattggctgggtttgaaaacaacccgactttgatgagtggcttcattgaacc 506
|||||||| |||||||| ||||||||||||||||||| ||||||||| |||||||||| |
Sbjct: 12673 cggtgcatcattggctgtgtttgaaaacaacccgactatgatgagtgtcttcattgaa-c 12615
Query: 507 tatgaactaagacaga-tctggcatttggtggcgggcatttcctttcc-aaaggggttaa 564
|||| ||||||||||| |||| |||||| || || |||| ||||| || ||||| |||||
Sbjct: 12614 tatgtactaagacagattctgtcatttgttgtcgtgcatctccttcccaaaaggcgttaa 12555
Query: 565 tagttacttaacttaaggttaaaaaataaggttttagttacgtttggccataggggacgg 624
||||||| |||| | ||| |||||||||||| |||||| ||| || |||||||| |||||
Sbjct: 12554 tagttac-taacattaggctaaaaaataaggatttagtaacg-ttagccataggtgacgg 12497
Query: 625 agc 627
|||
Sbjct: 12496 agc 12494
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8747
Number of Sequences: 1807
Number of extensions: 8747
Number of successful extensions: 138
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)