BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZA08FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1264 981 0.0
>3x_Contig1264
Length = 6524
Score = 981 bits (495), Expect = 0.0
Identities = 504/506 (99%), Gaps = 1/506 (0%)
Strand = Plus / Plus
Query: 87 gctctgagatctgactcaaatctttctctttaccataagtgaagtcatcaagacgagatt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6019 gctctgagatctgactcaaatctttctctttaccataagtgaagtcatcaagacgagatt 6078
Query: 147 tttggaaactgatggaaatgggtttcgagtaaccctctctgtgcaaacaatgcaccattt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6079 tttggaaactgatggaaatgggtttcgagtaaccctctctgtgcaaacaatgcaccattt 6138
Query: 207 ctttccacattggtcttgattcaatgaagtcttctccgataaatgctttgatttccttga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6139 ctttccacattggtcttgattcaatgaagtcttctccgataaatgctttgatttccttga 6198
Query: 267 taccgttggatctacggccgtacttacaccagatcccatcacccctccaaaaccaatcct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6199 taccgttggatctacggccgtacttacaccagatcccatcacccctccaaaaccaatcct 6258
Query: 327 ctaaatggtttccaaacttcgcagaccacttcatatcgggattgaatcgatttgacgagt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6259 ctaaatggtttccaaacttcgcagaccacttcatatcgggattgaatcgatttgacgagt 6318
Query: 387 catctttgacatagaactcattgtccgtattagaatgaacatggtacccgtcgatatcat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6319 catctttgacatagaactcattgtccgtattagaatgaacatggtacccgtcgatatcat 6378
Query: 447 tatttttgatcttgttataccgttcattagctaaacccaacggaagtccatttctactca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6379 tatttttgatcttgttataccgttcattagctaaacccaacggaagtccatttctactca 6438
Query: 507 aagcaagatctactacagccgat-ccacgttcgtttgggtataanggctgccaataaaca 565
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 6439 aagcaagatctactacagccgatcccacgttcgtttgggtataagggctgccaataaaca 6498
Query: 566 taacttgtccacccaaagccttgtcc 591
||||||||||||||||||||||||||
Sbjct: 6499 taacttgtccacccaaagccttgtcc 6524
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6948
Number of Sequences: 1807
Number of extensions: 6948
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)