BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZA08RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig566 1358 0.0
>3x_Contig566
Length = 2053
Score = 1358 bits (685), Expect = 0.0
Identities = 834/865 (96%), Gaps = 16/865 (1%)
Strand = Plus / Minus
Query: 55 caaagagcctcatc-actccttgcagagcaatttaactcactttgcttatttgcggatcc 113
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1108 caaagagcctcatccactccttgcagagcaatttaactcactttgcttatttgcggatcc 1049
Query: 114 catgactcaacctcctccaaacgattctcatataatttcattggatttattgcatgacct 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 catgactcaacctcctccaaacgattctcatataatttcattggatttattgcatgacct 989
Query: 174 gtatctaggttctttgactgcttatattgttaaactgatacccaattaccagaaagtctg 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 gtatctaggttctttgactgcttatattgttaaactgatacccaattaccagaaagtctg 929
Query: 234 gaaaattcatttgagcgcaaatttggaaactattacattggctattttgcagatgttgca 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 gaaaattcatttgagcgcaaatttggaaactattacattggctattttgcagatgttgca 869
Query: 294 gatttgggattatagatctctagacaatttgaaagatatccaagcaagaagccctgatgc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 gatttgggattatagatctctagacaatttgaaagatatccaagcaagaagccctgatgc 809
Query: 354 ataccctaaatacatgacatcgtggatcccatacgatctttctccgcccgaaatggaaat 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 ataccctaaatacatgacatcgtggatcccatacgatctttctccgcccgaaatggaaat 749
Query: 414 tctttatatgattgcaggattatctttctattcgatgcacaagatgcactctgataagcc 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tctttatatgattgcaggattatctttctattcgatgcacaagatgcactctgataagcc 689
Query: 474 gccgaggttgaacccattcttacctatgatgcttcgagcatggagaggtttaagttcagc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gccgaggttgaacccattcttacctatgatgcttcgagcatggagaggtttaagttcagc 629
Query: 534 attagtgttaggtttgcaaatagataggtttgaggaaatgcagatgctatatggtactcc 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 attagtgttaggtttgcaaatagataggtttgaggaaatgcagatgctatatggtactcc 569
Query: 594 agtaattgttagtgcagtcattcgtggagcttctgcgttgcgctcaa-tatcgc-acgat 651
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 568 agtaattgttagtgcagtcattcgtggagcttctgcgttgcgctcaattatcgcaacgat 509
Query: 652 tctcaac-gtcatgtggatgagaaagtgcacgattttaaacatcaaccttttgntgggtt 710
||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 508 tctcaacggtcatgtggatgagaagttgcacgattttaaacatcaaccttttggtgggtt 449
Query: 711 catgtctcctcatggaagggaantnnatgc-acgggcttctttacacatatgaaatgnta 769
||||||||||||||||||| || | |||| ||||| ||||||||||||||||||| ||
Sbjct: 448 catgtctcctcatggaaggaaatt--atgcaacggggctctttacacatatgaaatg-ta 392
Query: 770 tattttcgcagcacttctacccatca-gtatgggattatgancgaaattggttgaattat 828
| |||||||||||| ||| |||||| |||| ||||||||| ||||||| ||||||||||
Sbjct: 391 ttatttcgcagcactccta-ccatcaggtat-ggattatga-cgaaatt-gttgaattat 336
Query: 829 tgactgatttacaaaagggagatanaattgatgagaatgtcagatatatggtttgattat 888
|||||||| ||||||| ||||||| ||||||||| ||||||||||||| ||||||||||
Sbjct: 335 tgactgatatacaaaaaggagatagaattgatgaagatgtcagatatat-gtttgattat 277
Query: 889 ggagtactttgaattacaatgatgc 913
|||||||||| |||||||||||||
Sbjct: 276 -gagtactttg-attacaatgatgc 254
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5290
Number of Sequences: 1807
Number of extensions: 5290
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)