BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZA09FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1679 1074 0.0
>3x_Contig1679
Length = 11609
Score = 1074 bits (542), Expect = 0.0
Identities = 616/629 (97%), Gaps = 9/629 (1%)
Strand = Plus / Minus
Query: 89 tgtcagagggatcaagtacccttaactgtgcatctgtgaaattgacatacgttggtttca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8965 tgtcagagggatcaagtacccttaactgtgcatctgtgaaattgacatacgttggtttca 8906
Query: 149 acgtcgcgttcatcagtttttcagcatcattcccatttttcgccaactcagttgcatccc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8905 acgtcgcgttcatcagtttttcagcatcattcccatttttcgccaactcagttgcatccc 8846
Query: 209 acagtgctaactgtgtccctattagcaaaccgaaaacctctttccaaactctatcagcag 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8845 acagtgctaactgtgtccctattagcaaaccgaaaacctctttccaaactctatcagcag 8786
Query: 269 gagaaccatcactcttcaagtctttcaagatcaggaaaactccttcttggtaccttctat 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8785 gagaaccatcactcttcaagtctttcaagatcaggaaaactccttcttggtaccttctat 8726
Query: 329 gactttgtgctgataacaaagtcacgataggtaccaattcgggagaaagtgtgttcactg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8725 gactttgtgctgataacaaagtcacgataggtaccaattcgggagaaagtgtgttcactg 8666
Query: 389 tctgttccttgggcaatgaagctgcagccttctctttactcccattatcacttgaattac 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8665 tctgttccttgggcaatgaagctgcagccttctctttactcccattatcacttgaattac 8606
Query: 449 tgaagatgcgtccaaatgaggaagatctggatctcgatttaccagaacccttgtcactac 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8605 tgaagatgcgtccaaatgaggaagatctggatctcgatttaccagaacccttgtcactac 8546
Query: 509 caatcgtactagaactatcagagaatatgttccttggaggtgctagaaaa-tcaccgctg 567
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 8545 caatcgtactagaactatcagagaatatgttccttggaggtgctagaaaattcaccgctg 8486
Query: 568 atgagagcgttggcgatgacggcgaaagc-tttcagaanaga-cttcttcatcgttg-tt 624
||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||| ||
Sbjct: 8485 atgagagcgttggcgatgacggcgaaagcttttcagaaaagaccttcttcatcgttgttt 8426
Query: 625 ttgccagtgccttccctcttttgttctcaggtatc-aaaagcaccc-gagaag-agatac 681
|||||||||||||||||||||||||||||| ||| |||||||||| |||||| ||||||
Sbjct: 8425 ttgccagtgccttccctcttttgttctcagtaatcaaaaagcacccagagaagaagatac 8366
Query: 682 -aagtttcaatgggct-attcaaaaaaaa 708
||||| ||||||||| ||||||||||||
Sbjct: 8365 aaagttccaatgggctaattcaaaaaaaa 8337
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7048
Number of Sequences: 1807
Number of extensions: 7048
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)