BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC46ZA09RM1.SCF screened BAC_end
         (969 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1778                                                        1433   0.0  

>3x_Contig1778 
          Length = 27694

 Score = 1433 bits (723), Expect = 0.0
 Identities = 805/824 (97%), Gaps = 7/824 (0%)
 Strand = Plus / Minus

                                                                       
Query: 48  tttatcaatgcctttggttctgtcaaaaaaaa-tagtacaccgcttacacagaattatac 106
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 839 tttatcaatgcctttggttctgtcaaaaaaaaatagtacaccgcttacacagaattatac 780

                                                                       
Query: 107 ttgccttggcttgttcacaatatagtggtggaaatatagtattagtcttccaagaggtta 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ttgccttggcttgttcacaatatagtggtggaaatatagtattagtcttccaagaggtta 720

                                                                       
Query: 167 ctggttatataatttgttcatatctcatcgcatatcttttgtcaatgatttttcaaaact 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ctggttatataatttgttcatatctcatcgcatatcttttgtcaatgatttttcaaaact 660

                                                                       
Query: 227 gaaaaaaaaaaacgagaagcgaagagcatcagtgagcaaagttagcttcaagaaagaaaa 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gaaaaaaaaaaacgagaagcgaagagcatcagtgagcaaagttagcttcaagaaagaaaa 600

                                                                       
Query: 287 aagtgcgtggtgcggtgtaagggtttatcgattttctaccctgataatatgttagagttt 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aagtgcgtggtgcggtgtaagggtttatcgattttctaccctgataatatgttagagttt 540

                                                                       
Query: 347 acttcactcatacaaccaaaggaaaacgttactgagatgtgagcatcagcggaggcaatt 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 acttcactcatacaaccaaaggaaaacgttactgagatgtgagcatcagcggaggcaatt 480

                                                                       
Query: 407 gaggctcgttgttgtaagagagaacactatttgacatactaggtactgtttagatgattg 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gaggctcgttgttgtaagagagaacactatttgacatactaggtactgtttagatgattg 420

                                                                       
Query: 467 ctgctgtactaagttgaaattttgaagtcaaatgaaaaaaacatgggaatttaatcacaa 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ctgctgtactaagttgaaattttgaagtcaaatgaaaaaaacatgggaatttaatcacaa 360

                                                                       
Query: 527 caggtgtttctttaggcaattaagattttaaggtgcgcgacaattctgctcagctcaaga 586
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 caggtgtttctttaggcaattaagattttaaggtgcgcgacaattctgctcagctcaaga 300

                                                                       
Query: 587 cgataaatcacacaaagaatacattgataaattgagcagtatcagattcacatcgaggaa 646
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cgataaatcacacaaagaatacattgataaattgagcagtatcagattcacatcgaggaa 240

                                                                       
Query: 647 ttaagcggtattatttacttactatttcgttgtgttaaatcaaagatctatattcgtcga 706
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 239 ttaagcggtattatttacttactatttcgttgtgttaatccaaagatctatattcgtcga 180

                                                                       
Query: 707 acgaaagaaccacggagagaatatangtgttttaagtgtgtgcaggtcatgtcagacatt 766
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 179 acgaaagaaccacggagagaatataggtgttttaagtgtgtgcaggtcatgtcagacatt 120

                                                                       
Query: 767 gattngggatcttattatga-gcacttagcgtc-agacttcagaag-aatattg-aagat 822
           |||| ||  ||||||||||| |||||  ||||| ||||| |||||| ||||||| |||||
Sbjct: 119 gatttggattcttattatgaggcactaggcgtcaagactccagaagaaatattgaaagat 60

                                                       
Query: 823 tgggaaaggaccttttcgncaag-aaattc-gagacaattcaga 864
           ||||||||||||| | || |||| |||||| |||||||||||||
Sbjct: 59  tgggaaaggacctctccgccaagaaaattcggagacaattcaga 16


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,937
Number of Sequences: 1807
Number of extensions: 12937
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)