BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC46ZA10FM1.SCF screened BAC_end
         (997 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1517                                                         599   e-171
3x_Contig38                                                           170   3e-42

>3x_Contig1517 
          Length = 8289

 Score =  599 bits (302), Expect = e-171
 Identities = 343/350 (98%), Gaps = 5/350 (1%)
 Strand = Plus / Minus

                                                                        
Query: 88   tgggtaaaatggtaccaacagcatagtccaaaattagatgaagtagatatgaatgttgag 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4607 tgggtaaaatggtaccaacagcatagtccaaaattagatgaagtagatatgaatgttgag 4548

                                                                        
Query: 148  actgcagcagattccagagttgatctggcaccgaatctcatgcatagaaatgatgagttt 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4547 actgcagcagattccagagttgatctggcaccgaatctcatgcatagaaatgatgagttt 4488

                                                                        
Query: 208  gatcacaatgcggacatggacattgacatggatctcgatacagatccgtacgcggatgca 267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4487 gatcacaatgcggacatggacattgacatggatctcgatacagatccgtacgcggatgca 4428

                                                                        
Query: 268  gacatggacatagagctggatgaatagtccttagacatgtttgtgaagtattattatcat 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4427 gacatggacatagagctggatgaatagtccttagacatgtttgtgaagtattattatcat 4368

                                                                        
Query: 328  tttgatagaagtattaacacctatagagagagtatgtaaaacaactgatttttaacttgt 387
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 4367 tttgatagaagtattaacacctatagagagagtatgt-aaacaactgattttt-acttgt 4310

                                                              
Query: 388  tgaacttgatttaatgtgaaagaatattaagagtgtttaatgccaaaatt 437
            ||||| ||| |||||||||||||||| |||||||| |||||| |||||||
Sbjct: 4309 tgaac-tgaattaatgtgaaagaata-taagagtg-ttaatgtcaaaatt 4263


>3x_Contig38 
          Length = 925

 Score =  170 bits (86), Expect = 3e-42
 Identities = 86/86 (100%)
 Strand = Plus / Minus

                                                                       
Query: 88  tgggtaaaatggtaccaacagcatagtccaaaattagatgaagtagatatgaatgttgag 147
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  tgggtaaaatggtaccaacagcatagtccaaaattagatgaagtagatatgaatgttgag 31

                                     
Query: 148 actgcagcagattccagagttgatct 173
           ||||||||||||||||||||||||||
Sbjct: 30  actgcagcagattccagagttgatct 5


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,273
Number of Sequences: 1807
Number of extensions: 36273
Number of successful extensions: 438
Number of sequences better than 1.0e-20: 2
length of query: 997
length of database: 10,358,551
effective HSP length: 16
effective length of query: 981
effective length of database: 10,329,639
effective search space: 10133375859
effective search space used: 10133375859
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)