BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZA10RM1.SCF screened BAC_end
(986 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1553 890 0.0
>3x_Contig1553
Length = 8593
Score = 890 bits (449), Expect = 0.0
Identities = 471/476 (98%), Gaps = 3/476 (0%)
Strand = Plus / Minus
Query: 50 ggtaataaatatttcttatgctgatctggaatagagttgataatatccgtcaaccttggt 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1124 ggtaataaatatttcttatgctgatctggaatagagttgataatatccgtcaaccttggt 1065
Query: 110 tgttgcttcaacttgtaccttttagagtaccttgtaatcaatccattcaaattgacctcc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1064 tgttgcttcaacttgtaccttttagagtaccttgtaatcaatccattcaaattgacctcc 1005
Query: 170 ttgctggaaccaccagttaaagaactgatcaactcaatagtaatatcggaacaacattgc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 ttgctggaaccaccagttaaagaactgatcaactcaatagtaatatcggaacaacattgc 945
Query: 230 aagaaccgttccttctctggagctagcttttgtttattattctttggacccttacctttg 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 aagaaccgttccttctctggagctagcttttgtttattattctttggacccttacctttg 885
Query: 290 cgacccattacttatcgatttatcctagtttcctccgtgaaatacttctgttcacagttg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 cgacccattacttatcgatttatcctagtttcctccgtgaaatacttctgttcacagttg 825
Query: 350 aaccaaactagccgaccaactgtttccaaatattcaaagtacagagcactacaagttaac 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 aaccaaactagccgaccaactgtttccaaatattcaaagtacagagcactacaagttaac 765
Query: 410 cgagcccactcagagttacagctaaaactcatctcatctcatcccatcacatctcatcgc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 cgagcccactcagagttacagctaaaactcatctcatctcatcccatcacatctcatcgc 705
Query: 470 tggaagatgattttttttattcgaatttcaatcttttttttctttttaccgtcata 525
||||||||||||||||||| |||||||||| ||||||||| |||||||||||||
Sbjct: 704 tggaagatgatttttttta-tcgaatttcagtcttttttt--cttttaccgtcata 652
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,762
Number of Sequences: 1807
Number of extensions: 12762
Number of successful extensions: 397
Number of sequences better than 1.0e-20: 1
length of query: 986
length of database: 10,358,551
effective HSP length: 16
effective length of query: 970
effective length of database: 10,329,639
effective search space: 10019749830
effective search space used: 10019749830
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)