BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZA11FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig995 349 6e-96
>3x_Contig995
Length = 2553
Score = 349 bits (176), Expect = 6e-96
Identities = 363/408 (88%), Gaps = 13/408 (3%)
Strand = Plus / Minus
Query: 494 taaatccttggcttaagatgtactcatggaataattgtactcgttttccagatacaggga 553
||||||||| ||||| || |||||| ||||||||||||| ||||||| |||||||||
Sbjct: 2424 taaatccttttcttaatattaactcatttaataattgtactctttttccatatacaggga 2365
Query: 554 atctattgtagaattctcttgaatctgatttcaactccgaaatgaagcttgatttagt-a 612
||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 2364 atctattttataattctctttaatctgatttcaactccgaaatgaagcttgatttagtaa 2305
Query: 613 aagttccctggaattg-tttatagaatccgacact-ccaatgcatctgc-aacccatag- 668
|||||||||||||||| |||||||||||||||||| |||||||||| || |||||||||
Sbjct: 2304 aagttccctggaattgttttatagaatccgacactgccaatgcatcggcaaacccataga 2245
Query: 669 tattgcgagcga-catagtcataccattgaaagtctcgattactgatttgttattatgga 727
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2244 tattgcgagcgaccatagtcataccattgaaagtctcgattactgatttgttattattgt 2185
Query: 728 ttagaaagttc-tttcgataccagcagacattcc-aattgaaacttgttggggttcgtca 785
|| |||||| |||||||||||||||||| ||| |||||| || |||| | ||||||||
Sbjct: 2184 ataagaagttcttttcgataccagcagacaatccaaattgagac-tgtttgtgttcgtca 2126
Query: 786 gatt-accgatgaagggttgcttgattaa-tccaagtaagggtggtttggctaaactgcc 843
|||| |||||||||||||||||||| ||| |||||||||| |||||| | |||||||||
Sbjct: 2125 gattcaccgatgaagggttgcttgaataagtccaagtaagtgtggttagcataaactgcc 2066
Query: 844 gcttttacaaac-gatttttgggaaa-agcaaccctaattttgttcca 889
||||||||| || |||| |||||||| ||||| ||||||||| ||||
Sbjct: 2065 gcttttacagacggattcttgggaaatggcaacgctaattttgctcca 2018
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6314
Number of Sequences: 1807
Number of extensions: 6314
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)