BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZA11RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1719 1511 0.0
>3x_Contig1719
Length = 15804
Score = 1511 bits (762), Expect = 0.0
Identities = 874/898 (97%), Gaps = 11/898 (1%)
Strand = Plus / Plus
Query: 49 accttgtttttttttaggcctgctgactctaggctaatagtcaatgtacccttcggttga 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 accttgtttttttttaggcctgctgactctaggctaatagtcaatgtacccttcggttga 767
Query: 109 gaatagttgtggagcaaggtacataaagtgcagcaagattcttggtaggatataagttag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 gaatagttgtggagcaaggtacataaagtgcagcaagattcttggtaggatataagttag 827
Query: 169 gtatatttttacataacggttgtttcgttatggatattacaagtagtttcgagaagttac 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 gtatatttttacataacggttgtttcgttatggatattacaagtagtttcgagaagttac 887
Query: 229 tgtcattggagatgttgtttgtcctcttttcattttaatgtcttaatatagtaaatgaca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 tgtcattggagatgttgtttgtcctcttttcattttaatgtcttaatatagtaaatgaca 947
Query: 289 ctttaaattaccgaatgggatttaaaccattttctgactccaaggctcgaacaaagattt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 ctttaaattaccgaatgggatttaaaccattttctgactccaaggctcgaacaaagattt 1007
Query: 349 acaaactttaaacacttgctgtaatatcccaccgatctgttcatagagcggcgttcttac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 acaaactttaaacacttgctgtaatatcccaccgatctgttcatagagcggcgttcttac 1067
Query: 409 aatccgttggacagcaaaatccagcatatattctcttaacctggtaccgtattatggtgg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 aatccgttggacagcaaaatccagcatatattctcttaacctggtaccgtattatggtgg 1127
Query: 469 acgatattgtacgatcttcctcaccgcagcgagatagcagtgtcgaagatgtgtattcgg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1128 acgatattgtacgatcttcctcaccgcagcgagatagcagtgtcgaagatgtgtattcgg 1187
Query: 529 atttgtactccactttctctcagatgaccaccaccactgcaaatgatattgaacaacgac 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1188 atttgtactccactttctctcagatgaccaccaccactgcaaatgatattgaacaacgac 1247
Query: 589 catacccattcacatggaggacgggtattatgtttgntagttcgacaattggtgggatgc 648
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1248 catacccattcacatggaggacgggtattatgtttgttagttcgacaattggtgggatgc 1307
Query: 649 ttttcggttacgatactggtgtaatttctggggttttaatagcaatgaatccaagggatt 708
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1308 ttttcggttacgatactggtgtaatttctggggttttaatagcaatgaatccaaaggatt 1367
Query: 709 t-aactttcatagtttggaaatttggcaaaa-gaaat-attacttctattacatgtgcct 765
| ||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||
Sbjct: 1368 taaactttcatagtttggaaatttggcaaaaggaaataatcacttctataacatgtgctg 1427
Query: 766 ggtcattcataggatcgatantagcattccccttggctgacagatgcngtaggaaacaca 825
| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 1428 gttcattcataggatcgataatagcattccccttggctgacagatgcggtaggaaacaca 1487
Query: 826 cgtttaacggtttgttgcatcattttttgctgcctcatcgaatgctaatggcaggtttct 885
|| ||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||
Sbjct: 1488 cg-ttaacggtttgttgcatca-tttttgctgcctcatcg-atgctaatggca-gtttct 1543
Query: 886 tacacttttcgagaatattattcaccgntaaggctggtccgttggtataaccgttggc 943
||||| ||||||| || ||| |||||| | |||||||| |||||||||| ||||||||
Sbjct: 1544 tacac-tttcgag-atgttagtcaccggt-aggctggt-cgttggtatagccgttggc 1597
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6129
Number of Sequences: 1807
Number of extensions: 6129
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)