BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZA12FM1.SCF screened BAC_end
(996 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1701 922 0.0
3x_Contig1805 674 0.0
>3x_Contig1701
Length = 10926
Score = 922 bits (465), Expect = 0.0
Identities = 555/575 (96%), Gaps = 8/575 (1%)
Strand = Plus / Minus
Query: 87 cagcgctaccctcgtacgttgatatcaagttggatgtagatgctgtggtagtagttacta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8175 cagcgctaccctcgtacgttgatatcaagttggatgtagatgctgtggtagtagttacta 8116
Query: 147 ctcgtgtttctgcggtagagcttgtttgtgcttgtctggtttcactttcggatgacacat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8115 ctcgtgtttctgcggtagagcttgtttgtgcttgtctggtttcactttcggatgacacat 8056
Query: 207 cagaagtgatagcgatttcggctgatgagacttcagcattttgagaagcggttgttactt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8055 cagaagtgatagcgatttcggctgatgagacttcagcattttgagaagcggttgttactt 7996
Query: 267 caacactagaactttggtctttgtttgtacctgtagcaaatgaggtttctctggtagaag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7995 caacactagaactttggtctttgtttgtacctgtagcaaatgaggtttctctggtagaag 7936
Query: 327 tttcatcgatctccgacttttgagtgtgatactcattagatgcactttcagtggtagtgg 386
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7935 tttcatcgatctccgactttgaagtgtgatactcattagatgcactttcagtggtagtgg 7876
Query: 387 tatcgataggacaaagtggtgttgtagacggtagtaacaccgttacttgtttgtattgac 446
|||||||||||| |||||||| ||||||||||||||||||||||||||| ||||| ||||
Sbjct: 7875 tatcgataggac-aagtggtggtgtagacggtagtaacaccgttacttg-ttgtagtgac 7818
Query: 447 agtagtcaatgagaagggttgnctgtgttgatgttacatcagacgtaatagtgttactag 506
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7817 agtagtcaatgagaa-ggttggctgtgttgatgttacatcagacgtaatagtgttactag 7759
Query: 507 cccaaccgctaaatgttngttttggtttctgcaagagtttcaactgagtaaaatgccttg 566
||||||||||||||||| | ||||||||||||| |||||||||||||||||| |||||||
Sbjct: 7758 cccaaccgctaaatgttgg-tttggtttctgcaggagtttcaactgagtaaattgccttg 7700
Query: 567 attgttggaatttcatcctcaccatttgaggtaacattttcagttggcgaaggtggtaag 626
|||||||||||| ||||||||||| ||||||||||| |||||| ||||||||||||| ||
Sbjct: 7699 attgttggaattccatcctcaccagttgaggtaacaatttcag-tggcgaaggtggt-ag 7642
Query: 627 tattttcgccttgtccagctggtattacacggttg 661
||| |||||| ||||||||||||| ||||||||||
Sbjct: 7641 tatattcgcc-tgtccagctggta-tacacggttg 7609
>3x_Contig1805
Length = 19369
Score = 674 bits (340), Expect = 0.0
Identities = 390/403 (96%), Gaps = 3/403 (0%)
Strand = Plus / Minus
Query: 87 cagcgctaccctcgtacgttgatatcaagttggatgtagatgctgtggtagtagttacta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8026 cagcgctaccctcgtacgttgatatcaagttggatgtagatgctgtggtagtagttacta 7967
Query: 147 ctcgtgtttctgcggtagagcttgtttgtgcttgtctggtttcactttcggatgacacat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7966 ctcgtgtttctgcggtagagcttgtttgtgcttgtctggtttcactttcggatgacacat 7907
Query: 207 cagaagtgatagcgatttcggctgatgagacttcagcattttgagaagcggttgttactt 266
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7906 cagaagtgatagcgatgtcggctgatgagacttcagcattttgagaagcggttgttactt 7847
Query: 267 caacactagaactttggtctttgtttgtacctgtagcaaatgaggtttctctggtagaag 326
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7846 caacactagaactttggtctttgtttgtacctgtagcaaatgaggtttctctggtagaaa 7787
Query: 327 tttcatcgatctccgacttttgagtgtgatactcattagatgcactttcagtggtagtgg 386
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 7786 tttcatcgatctccgactttgaagtgtgatactcattagatgcactttcagtggtagtgg 7727
Query: 387 tatcgataggacaaagtggtgttgtagacggtagtaacaccgttacttgtttgtattgac 446
|||||||||||| |||||||| ||||||||||||||||||||||||||| ||||| ||||
Sbjct: 7726 tatcgataggac-aagtggtggtgtagacggtagtaacaccgttacttg-ttgtagtgac 7669
Query: 447 agtagtcaatgagaagggttgnctgtgttgatgttacatcaga 489
||||||||| ||||| |||| |||||||||| ||||||||||
Sbjct: 7668 agtagtcaaggagaa-agttggctgtgttgattttacatcaga 7627
Score = 260 bits (131), Expect = 5e-69
Identities = 207/225 (92%), Gaps = 6/225 (2%)
Strand = Plus / Minus
Query: 437 ttgtattgacagtagtcaatgagaagggttgnctgtgttgatgttacatcagacgtaata 496
||||| ||||||||||||||||||||| ||| || |||||||||||||||||||||| ||
Sbjct: 7543 ttgtagtgacagtagtcaatgagaagg-ttggctctgttgatgttacatcagacgtagta 7485
Query: 497 gtgttactagcccaaccgctaaatgttngttttggtttctgcaagagtttcaactgagta 556
||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||
Sbjct: 7484 gtgttactagcccaaccgctaaatgttggttt-ggtttctgcaggagtttcaactgagta 7426
Query: 557 aaatgccttgattgttggaatttcatcctcaccatttgaggtaacattttcagttggcga 616
|| || |||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||
Sbjct: 7425 aattgtcttgattgttggaattccatcctcaccagttgaggtaacaatttcag-tggcga 7367
Query: 617 aggtggtaagtattttcgccttgtccagctggtattacacggttg 661
||||||| ||||| |||||| ||||||||||||| ||||||||||
Sbjct: 7366 aggtggt-agtatattcgcc-tgtccagctggta-tacacggttg 7325
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7769
Number of Sequences: 1807
Number of extensions: 7769
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 2
length of query: 996
length of database: 10,358,551
effective HSP length: 16
effective length of query: 980
effective length of database: 10,329,639
effective search space: 10123046220
effective search space used: 10123046220
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)