BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZA12RM1.SCF screened BAC_end
(1005 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1598 1390 0.0
>3x_Contig1598
Length = 11902
Score = 1390 bits (701), Expect = 0.0
Identities = 759/772 (98%), Gaps = 5/772 (0%)
Strand = Plus / Minus
Query: 46 aagcttctacgcaatcattcttggcaattggaacacgctttgggtagatatttcgacgac 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11703 aagcttctacgcaatcattcttggcaattggaacacgctttgggtagatatttcgacgac 11644
Query: 106 aattggaaagaaaatctagactttgcaccacagcctacacccgctcaaaacacaattcct 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11643 aattggaaagaaaatctagactttgcaccacagcctacacccgctcaaaacacaattcct 11584
Query: 166 gtccaacaatcacaatctgatgagcgccagatcctggaagatacgcgttcagaattacca 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11583 gtccaacaatcacaatctgatgagcgccagatcctggaagatacgcgttcagaattacca 11524
Query: 226 ttatcactgagaatcccaaacattttggagaacccgtttggaatggtacctaaactaccc 285
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11523 atatcactgagaatcccaaacattttggagaacccgtttggaatggtacctaaactaccc 11464
Query: 286 tttattcacagattaccatacaattataaagaaaaattccaaatcatcggattaaacgga 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11463 tttattcacagattaccatacaattataaagaaaaattccaaatcatcggattaaacgga 11404
Query: 346 cagccaaatgctactgatgtatactcgcgcaattctgtattacttgccgtcttatttttg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11403 cagccaaatgctactgatgtatactcgcgcaattctgtattacttgccgtcttatttttg 11344
Query: 406 ccgaatttaatagttaggcttagcgtgcatatgttttcatggcttggcattctaatctcg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11343 ccgaatttaatagttaggcttagcgtgcatatgttttcatggcttggcattctaatctcg 11284
Query: 466 tatgcactaggtcagaatatggcaaaatcaaaggcttcatataattgggtaatcccgcag 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11283 tatgcactaggtcagaatatggcaaaatcaaaggcttcatataattgggtaatcccgcag 11224
Query: 526 aaacctcaggtggacagaaaacctgaagatacatttgcggatataagggaaacatgtggt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11223 aaacctcaggtggacagaaaacctgaagatacatttgcggatataagggaaacatgtggt 11164
Query: 586 gaaaatgctgaagaacttttgtctttatgctctatgaagagctacaatggaatatttgat 645
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 11163 gaaaatgctgaagaacttttgtctttatgctctatgaagagctacaatgaaatatttgat 11104
Query: 646 gaatgcgaatcgaaatacaangttatgcttttgttattcttgggaacaataactggagaa 705
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 11103 gaatgcgaatcgaaatacaagtttatgcttttgttattcttgggaccaataactggagaa 11044
Query: 706 gaag-aaaaatttgtcatagctcg-aaacattcttaacgcactttttatcccatccatca 763
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 11043 gaagaaaaaatttgtcatagctcgaaaacattcttaacgcactttttatcccatccatca 10984
Query: 764 acttattgcacttttcaaaaattcataacgacaactttggaaatttacatca 815
|| ||||||||||||| |||| ||||| ||||||| |||||||| |||||||
Sbjct: 10983 ac-tattgcacttttc-aaaactcatagcgacaac-ttggaaatatacatca 10935
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8060
Number of Sequences: 1807
Number of extensions: 8060
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 1005
length of database: 10,358,551
effective HSP length: 16
effective length of query: 989
effective length of database: 10,329,639
effective search space: 10216012971
effective search space used: 10216012971
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)