BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZB01RM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1778 1572 0.0
>3x_Contig1778
Length = 27694
Score = 1572 bits (793), Expect = 0.0
Identities = 832/841 (98%), Gaps = 3/841 (0%)
Strand = Plus / Plus
Query: 48 ttttcttactgcgaggatcttgataatatcttgaaagtaaaaaataatacaaattgttat 107
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23831 ttttcttactgtgaggatcttgataatatcttgaaagtaaaaaataatacaaattgttat 23890
Query: 108 tcttatattaaaaaggtggttacgtgtataaagtagtagtaattataaaaaatagtataa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23891 tcttatattaaaaaggtggttacgtgtataaagtagtagtaattataaaaaatagtataa 23950
Query: 168 cagaatgggaatggtcagttgctgacattataaagaagtctttcaaaagataagcatgcc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23951 cagaatgggaatggtcagttgctgacattataaagaagtctttcaaaagataagcatgcc 24010
Query: 228 cagtaattattatgttagacaattatccaaatataggatgagaaaagacataacagataa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24011 cagtaattattatgttagacaattatccaaatataggatgagaaaagacataacagataa 24070
Query: 288 gatgttggaatcatcttcagtaagcaaaggcgatatctgcagctcttaagtcaatcgcac 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24071 gatgttggaatcatcttcagtaagcaaaggcgatatctgcagctcttaagtcaatcgcac 24130
Query: 348 aatctcagattgtgataccgatcagtagatactgagacgccaacagttttctcagagcac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24131 aatctcagattgtgataccgatcagtagatactgagacgccaacagttttctcagagcac 24190
Query: 408 ttcatcaaaaaccaaacataacatttgtctttaaaaagagcgaagccatttttattgtat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24191 ttcatcaaaaaccaaacataacatttgtctttaaaaagagcgaagccatttttattgtat 24250
Query: 468 acgcttttaatagattataatttcttcagccaaatgaccagcaaaccagaaaaaaagacc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24251 acgcttttaatagattataatttcttcagccaaatgaccagcaaaccagaaaaaaagacc 24310
Query: 528 aaaaccaaaacctgtaaagagggattaatattaaaaaagtccaaactaaaaagaaaaatg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24311 aaaaccaaaacctgtaaagagggattaatattaaaaaagtccaaactaaaaagaaaaatg 24370
Query: 588 cttcaaataaggtttgattcttcctcagtgaaggaaagttttaaatggtcaccatatttg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24371 cttcaaataaggtttgattcttcctcagtgaaggaaagttttaaatggtcaccatatttg 24430
Query: 648 tatttcagctttttaatgttgtgttgagtttttgtgtgttgttgtattctctgaatgttg 707
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24431 tatttgagctttttaatgttgtgttgagtttttgtgtgttgttgtattctctgaatgttg 24490
Query: 708 tttcaattttaaaaaaaattgattaatggttgttaaaagatttaaaatgttgattaa-aa 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 24491 tttcaattttaaaaaaaattgattaatggttgttaaaagatttaaaatgttgattaagaa 24550
Query: 767 aaacgttaatgttttaaattatgttttaagtttgtatcaaactttttagaacaggaaggc 826
||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||
Sbjct: 24551 aaacgttaatgttttaaattatgtttt-agtttgtatcaaacttcttagaacaagaaggc 24609
Query: 827 -acaccagcggcaacggcagcaccgaaaacaccagcacccatagcgttagcaacggtagc 885
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 24610 aacaccagcggcaacggcagcaccgaaaacaccagcacccatagcgttagcagcggcagc 24669
Query: 886 a 886
|
Sbjct: 24670 a 24670
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9388
Number of Sequences: 1807
Number of extensions: 9388
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)