BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZB02RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1565 1631 0.0
>3x_Contig1565
Length = 10922
Score = 1631 bits (823), Expect = 0.0
Identities = 858/865 (99%), Gaps = 6/865 (0%)
Strand = Plus / Plus
Query: 49 agggaaactatgtgaatgataagcaatattcattgcttcacatcgataacatggggctga 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9798 agggaaactatgtgaatgataagcaatattcattgcttcacatcgataacatggggctga 9857
Query: 109 acgtttctttcaggcttggtgcagatataataaagataaaggttgacgatggtgatgacg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9858 acgtttctttcaggcttggtgcagatataataaagataaaggttgacgatggtgatgacg 9917
Query: 169 agattatagactgtactttcaatggagagaagaatatttctttattgggatctatttacg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9918 agattatagactgtactttcaatggagagaagaatatttctttattgggatctatttacg 9977
Query: 229 gcataactaataggttccagtcgattataatgtaaggaacttgttcacatgtttgattct 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9978 gcataactaataggttccagtcgattataatgtaaggaacttgttcacatgtttgattct 10037
Query: 289 aggcaggatataataaattaccaatagacaggaatacccaaaggcacatcccaacacttt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10038 aggcaggatataataaattaccaatagacaggaatacccaaaggcacatcccaacacttt 10097
Query: 349 ctccgggaatgtgtgatagtatattgatgttatcgttagcacatttatccaaatgcacaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10098 ctccgggaatgtgtgatagtatattgatgttatcgttagcacatttatccaaatgcacaa 10157
Query: 409 aaccagtaaaacaatccattgatatttagaagacggtgaattccaggatatcgtatgttg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10158 aaccagtaaaacaatccattgatatttagaagacggtgaattccaggatatcgtatgttg 10217
Query: 469 gttcgcatattgcagcaagagtttcaactcctgccatagagttagacttatgtttgttaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10218 gttcgcatattgcagcaagagtttcaactcctgccatagagttagacttatgtttgttaa 10277
Query: 529 gaaacaaaaatgaccactgatatcaaatccgcctacccagctcccacctaaagatctaca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10278 gaaacaaaaatgaccactgatatcaaatccgcctacccagctcccacctaaagatctaca 10337
Query: 589 tttctctgcagatttcgtatcagaaagatcgcagtttcctcccgtccacacgaaaagatg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10338 tttctctgcagatttcgtatcagaaagatcgcagtttcctcccgtccacacgaaaagatg 10397
Query: 649 gtcgatgaacaagaaacaggcccataataccaggtataccaaaacaaactttatcgaata 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10398 gtcgatgaacaagaaacaggcccataataccaggtataccaaaacaaactttatcgaata 10457
Query: 709 tacttttagaactttcccaacttgtttcagaagatcgggagaattacggtcctgttctcc 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10458 tacttttagaactttcccaacttgtttcagaagatcgggagaattacggtcctgttctcc 10517
Query: 769 attactagtgggtaacaacgattcctcgtgcttcattcgaacgtatacttgtaggcctat 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10518 attactagtgggtaacaacgattcctcgtgcttcattcgaacgtatacttgtaggcctat 10577
Query: 829 caataaa-cgaac-atacgtcgaatatgtagatacctttgtnaaagcaa--taatgattc 884
||||||| ||||| ||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 10578 caataaaccgaacaatacgtcgaatatgtagatacctttgt--aagcaaataaatgattc 10635
Query: 885 actacgttgcgtccaccgatccagt 909
|||||||||||||||||||||||||
Sbjct: 10636 actacgttgcgtccaccgatccagt 10660
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6222
Number of Sequences: 1807
Number of extensions: 6222
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)