BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZB03FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig694 1168 0.0
>3x_Contig694
Length = 2435
Score = 1168 bits (589), Expect = 0.0
Identities = 673/693 (97%), Gaps = 6/693 (0%)
Strand = Plus / Minus
Query: 89 ttttataataaaacacaatgtttatttgcatattttatccaaatccttcaaatggacaga 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 ttttataataaaacacaatgtttatttgcatattttatccaaatccttcaaatggacaga 1022
Query: 149 atattagacgtttcgaccaggttttgggacttcaagctctgcaataagccaattccgcag 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 atattagacgtttcgaccaggttttgggacttcaagctctgcaataagccaattccgcag 962
Query: 209 aaagtagtaacatcaattgccagaaaatggggccttgatgtagaacatgcagaaactatt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 aaagtagtaacatcaattgccagaaaatggggccttgatgtagaacatgcagaaactatt 902
Query: 269 agaactaatttctaccttcactcttcgttacatttgatagatgcggatgtttggattcac 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 agaactaatttctaccttcactcttcgttacatttgatagatgcggatgtttggattcac 842
Query: 329 cttcaaaagagattggtcaagttaaacctaccatcagccaatttatcatcaaatgcattc 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 cttcaaaagagattggtcaagttaaacctaccatcagccaatttatcatcaaatgcattc 782
Query: 389 gaaaaagatcctttgtactcggctgcttcctcggtagatgcaccaatggatttaaatctt 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaaaaagatcctttgtactcggctgcttcctcggtagatgcaccaatggatttaaatctt 722
Query: 449 gacctttcaaacttcttcgatcttgatgccaatttaggttttccttccttctccttctag 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gacctttcaaacttcttcgatcttgatgccaatttaggttttccttccttctccttctag 662
Query: 509 ttattcttcatcttacccttcaataatatgttcatgtaaatagtaaatgatgattgtaac 568
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 661 ttattcttcatcttacccttcaataatatgttcatgtaaatagtaaatgataattgtaac 602
Query: 569 agtaaaatatctaaattggaaactgaactgtgactctaacgccctgtataaatccctact 628
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 601 agtaaaatatctaaattggaaactgaactttgactctaacgccctgtataaatccctact 542
Query: 629 atgtatcacctattgggtttatgtcctcgattttctgatcacattggagaccctttcgtc 688
||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 541 atgtatcacct-ttgggtttatgtcttcg-ttttctgatcacattggagaccctttcgtc 484
Query: 689 at-ctgttcacgttacttttaatttgacacccggattttcttgtc-ctatttaaaggttt 746
|| || | |||| ||||| |||||||||| | || |||| |||| |||||||| |||||
Sbjct: 483 atactctcgacgtaactttaaatttgacacgc-gaatttcatgtcactatttaagggttt 425
Query: 747 aaaaaagttacc-atgggtggaaaaactactct 778
|||||||||||| ||||||| |||| |||||||
Sbjct: 424 aaaaaagttaccaatgggtgaaaaagctactct 392
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7694
Number of Sequences: 1807
Number of extensions: 7694
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)