BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZB03RM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1409 1687 0.0
>3x_Contig1409
Length = 9404
Score = 1687 bits (851), Expect = 0.0
Identities = 908/924 (98%), Gaps = 4/924 (0%)
Strand = Plus / Minus
Query: 47 tcttgtcgggatataccttggtgctacaacaagtctttttaactctaatgatgttttttc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4972 tcttgtcgggatataccttggtgctacaacaagtctttttaactctaatgatgttttttc 4913
Query: 107 tgatcccaaagatttcttgttggggattcagaatttaggtgtgaaggatctctacttgac 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4912 tgatcccaaagatttcttgttggggattcagaatttaggtgtgaaggatctctacttgac 4853
Query: 167 tccagaattactgtatttgataatggataaagccgctggattattggcgtcacaatctaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4852 tccagaattactgtatttgataatggataaagccgctggattattggcgtcacaatctaa 4793
Query: 227 acaaaacgcaagtctgaagaaagaagttcttttgaaaaatggatccactatctccagtgg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4792 acaaaacgcaagtctgaagaaagaagttcttttgaaaaatggatccactatctccagtgg 4733
Query: 287 atttatgacaaatattcaaaatataatggtccctttcaatggccgtcctaaattcactac 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4732 atttatgacaaatattcaaaatataatggtccctttcaatggccgtcctaaattcactac 4673
Query: 347 tatagaggcattgttagcaaaatactctcacttaggagtctcttcttcccaagtcaacta 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4672 tatagaggcattgttagcaaaatactctcacttaggagtctcttcttcccaagtcaacta 4613
Query: 407 cgtctatgaacatcatttcaatccctttatatcgatgcgatcttacctaggaattccccc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4612 cgtctatgaacatcatttcaatccctttatatcgatgcgatcttacctaggaattccccc 4553
Query: 467 tgttgatatttatttggagccaatttgtttcagagaaggcataatcagtgaagtggatcc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4552 tgttgatatttatttggagccaatttgtttcagagaaggcataatcagtgaagtggatcc 4493
Query: 527 agataccattccaccgacagaattggaaaaatatgttcatttacaggattcaggtatagt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4492 agataccattccaccgacagaattggaaaaatatgttcatttacaggattcaggtatagt 4433
Query: 587 acccgtttgtaccgatgtgtccattatcaatcctgaaactcttgaaccatgttacgagaa 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4432 acccgtttgtaccgatgtgtccattatcaatcctgaaactcttgaaccatgttacgagaa 4373
Query: 647 agaaataggagaaatatggtgctgttcagaagctaccgttttcgatcattacgtttctac 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4372 agaaataggagaaatatggtgctgttcagaagctaccgttttcgatcattacgtttctac 4313
Query: 707 tacgagtacacaatctgagttgacaaccacgccacaggaaattagtanatctactaagtc 766
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 4312 tacgagtacacaatctgagttgacaaccacgcaacaggaaattagtaaatctactaagtc 4253
Query: 767 aaaactaaagagagacccattcattgcngaa-acattanagccaagatcaatnatgatgt 825
||||||||||||||||||||||||||| ||| | ||| ||||||||||||| |||||||
Sbjct: 4252 aaaactaaagagagacccattcattgcggaacaatttaaagccaagatcaataatgatgt 4193
Query: 826 tgataatgggttgacgtatttgagaactggtgatttagggtttatcaaancagnnttcag 885
||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||
Sbjct: 4192 tgataatgggttgacgtatttgagaactggtgatttaggttttatcaaaacag-tttcaa 4134
Query: 886 naattgactcacaaggaaacaacataactctctcactcctattatgtgctcggaagtatt 945
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 4133 gaattgactcacaaggaaacaacataactctctcactccta-tatgtgctcggaagtatt 4075
Query: 946 agcgagacttattgaagttcttgg 969
|||||||| |||||||||||||||
Sbjct: 4074 agcgagac-tattgaagttcttgg 4052
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6810
Number of Sequences: 1807
Number of extensions: 6810
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)