BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZB04FM1.SCF screened BAC_end
(882 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1027 0.0
>3x_Contig1771
Length = 25932
Score = 1027 bits (518), Expect = 0.0
Identities = 587/605 (97%), Gaps = 4/605 (0%)
Strand = Plus / Plus
Query: 82 tgaaagagaaaaaaacgagtttggagcttctccggaagatgaagaataaagttcaagcat 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18231 tgaaagagaaaaaaacgagtttggagcttctccggaagatgaagaataaagttcaagcat 18290
Query: 142 tagtggatgcattctttggttttcggcgtattcagtatctgtgagactaatttcgatagt 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18291 tagtggatgcattctttggttttcggcgtattcagtatctgtgagactaatttcgatagt 18350
Query: 202 tatcctagcaattattatatccaaaggaaggctgtagatataaacaacatgggtggtttc 261
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18351 tatcctagcaattagtatatccaaaggaaggctgtagatataaacaacatgggtggtttc 18410
Query: 262 agatttccaatcaagacaaagcttccttcaacgtatttgaatgctagagttatcagagac 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18411 agatttccaatcaagacaaagcttccttcaacgtatttgaatgctagagttatcagagac 18470
Query: 322 aatttcaagagacagcaagttgcagacaatgaagtcactgtaaaggcattgaaattcatt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18471 aatttcaagagacagcaagttgcagacaatgaagtcactgtaaaggcattgaaattcatt 18530
Query: 382 gctagaaatactactctacctccaaggtcgagaatggaagctcagttacaactttctgtg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18531 gctagaaatactactctacctccaaggtcgagaatggaagctcagttacaactttctgtg 18590
Query: 442 atgcctaactatacaagaatgacacaaatcaagaacagatgtattgaaacgggacactcc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18591 atgcctaactatacaagaatgacacaaatcaagaacagatgtattgaaacgggacactcc 18650
Query: 502 agatctgttctgagtgatttcagattgtgtagatcgcaattcagagaac-tgccaggaaa 560
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 18651 agatctgttctgagtgatttcagattgtgtagatcgcaattcagagaacttgccaggaaa 18710
Query: 561 ggtgatctacctggtgtgaggaaaggtgtattntagatgcaatttaccattttttgtt-c 619
||||||||||||||||||| ||| ||||||| |||||||| |||| ||| ||||||| |
Sbjct: 18711 ggtgatctacctggtgtgaagaagggtgtatggtagatgcagtttagcatcttttgttcc 18770
Query: 620 ctgatactgaatttagtaaaagttggaat-tttctcttcc-catgcctgttaattttttt 677
|||||||||| ||||||||||||||||| ||||||| || ||||| ||| ||| |||||
Sbjct: 18771 ctgatactgaggttagtaaaagttggaatctttctctcccgcatgcatgtaaatattttt 18830
Query: 678 aatta 682
|||||
Sbjct: 18831 aatta 18835
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7748
Number of Sequences: 1807
Number of extensions: 7748
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 882
length of database: 10,358,551
effective HSP length: 16
effective length of query: 866
effective length of database: 10,329,639
effective search space: 8945467374
effective search space used: 8945467374
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)