BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZB04RM1.SCF screened BAC_end
(898 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1541 1417 0.0
>3x_Contig1541
Length = 10565
Score = 1417 bits (715), Expect = 0.0
Identities = 764/777 (98%), Gaps = 3/777 (0%)
Strand = Plus / Minus
Query: 49 gattcccca-aggtgagtctatcactgcagcacccgtaagccctgacaagagcgttgtca 107
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7207 gattccccagaggtgagtctatcactgcagcacccgtaagccctgacaagagcgttgtca 7148
Query: 108 atgatgatcaacctgagcatgagacagatgaagcacacaatgaagatacgcgtagcaatg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7147 atgatgatcaacctgagcatgagacagatgaagcacacaatgaagatacgcgtagcaatg 7088
Query: 168 aaactgagatacgaagtggtgatcatgatcaagaaactggaatgaatactgtttcagcta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7087 aaactgagatacgaagtggtgatcatgatcaagaaactggaatgaatactgtttcagcta 7028
Query: 228 atgcaacaaatcaggaacccgtgtcagttggctctcggaatgagcttcgaggttcaaggc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7027 atgcaacaaatcaggaacccgtgtcagttggctctcggaatgagcttcgaggttcaaggc 6968
Query: 288 agacacaaatcgaggatcaagataacaatcatacaaatgttcagcagcagttaatccttc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6967 agacacaaatcgaggatcaagataacaatcatacaaatgttcagcagcagttaatccttc 6908
Query: 348 aacccgctataacgccgaaaagtctcctaggagatgatacgggtcgagtattgattaatt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6907 aacccgctataacgccgaaaagtctcctaggagatgatacgggtcgagtattgattaatt 6848
Query: 408 cttcttcgatcaagagagcttctcgtgagtcttctgtcaccaagtcattcccttggccgg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6847 cttcttcgatcaagagagcttctcgtgagtcttctgtcaccaagtcattcccttggccgg 6788
Query: 468 tacaaagggatgcaaaggatttcacagcaacaaatgaaattaaagctccacctactaagg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6787 tacaaagggatgcaaaggatttcacagcaacaaatgaaattaaagctccacctactaagg 6728
Query: 528 acaatgagattacaaacgagggaaatcaaattccttccgctgcagatgacanagttcatt 587
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 6727 acaatgagattacaaacgagggaaatcaaattccttccgctgcagatgacaaagttcatt 6668
Query: 588 tgagttcggtgactaaaacaattcgcgatcgttcccagagacgatccaacatgtttgcac 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6667 tgagttcggtgactaaaacaattcgcgatcgttcccagagacgatccaacatgtttgcac 6608
Query: 648 ccttaccaagcanagatccgttaatagttcaaaccaactcc-agtcagcataagaagaaa 706
|||||||||||| ||||||||||||||||| |||||||||| ||||||||||||| ||||
Sbjct: 6607 ccttaccaagcaaagatccgttaatagttc-aaccaactccaagtcagcataagaggaaa 6549
Query: 707 atctatgggccgacgactctcccgatccatcaagaaaaagaactgaaagtctccccattg 766
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6548 atcaatgggccgacgactctcccgatccatcaagaaaagaaactgaaagtctccccattg 6489
Query: 767 catatccctgccaatagctcagaatcaaggttgaaatcttcttcgtatcaaggaaac 823
||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 6488 catatccctgccaatagctcagaatcaaggttgaaatctcctcgttatcaaggaaac 6432
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6282
Number of Sequences: 1807
Number of extensions: 6282
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 898
length of database: 10,358,551
effective HSP length: 16
effective length of query: 882
effective length of database: 10,329,639
effective search space: 9110741598
effective search space used: 9110741598
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)