BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZB05FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1085 1402 0.0
>3x_Contig1085
Length = 5008
Score = 1402 bits (707), Expect = 0.0
Identities = 757/774 (97%)
Strand = Plus / Plus
Query: 87 ttaggagctttataaaaagaaatgaggtttggaagtgtcttggcgaggaatatatcgtta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4063 ttaggagctttataaaaagaaatgaggtttggaagtgtcttggcgaggaatatatcgtta 4122
Query: 147 tggaaatacttaaaagtgaccctaggacacctcaacgcatttgataagatgatgttatgg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4123 tggaaatacttaaaagtgaccctaggacacctcaacgcatttgataagatgatgttatgg 4182
Query: 207 ctgcgagttataacttcagtgggaattatcgtttttgtccttgttttgactgctatttct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4183 ctgcgagttataacttcagtgggaattatcgtttttgtccttgttttgactgctatttct 4242
Query: 267 gccgcatcaccaaattcgttatatttaggacgattggacacttcaaatgttaacattttg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4243 gccgcatcaccaaattcgttatatttaggacgattggacacttcaaatgttaacattttg 4302
Query: 327 cagggactatttgataagctcagcagttctgttgtcagtgcaaaactgtctgatattaat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4303 cagggactatttgataagctcagcagttctgttgtcagtgcaaaactgtctgatattaat 4362
Query: 387 aacggagcaggactcacaacagcagagattcttttactcacgcggtatgtagactcacag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4363 aacggagcaggactcacaacagcagagattcttttactcacgcggtatgtagactcacag 4422
Query: 447 gtccacgacgtgcccgattatataaagacaggagtttacggatggtgcagcatgaaacat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4423 gtccacgacgtgcccgattatataaagacaggagtttacggatggtgcagcatgaaacat 4482
Query: 507 gcttctcaagaattatggcagcctgacggtacttggaaggaggaacataactctacaaag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4483 gcttctcaagaattatggcagcctgacggtacttggaaggaggaacataactctacaaag 4542
Query: 567 gctatgacttgtcacagggaaggagcgcaatacttattgaactatagaaagctattagat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4543 gctatgacttgtcacagggaaggagcgcaatacttattgaactatagaaagctattagat 4602
Query: 627 gacctangtttggaaatagtgttaagttacgcataccgatatactttacacgatggtgtt 686
|||||| |||||| |||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 4603 gacctaggtttgggaatagtgttaagttacgcatacggatatacttacaacgatggtgtt 4662
Query: 687 ttggatcacgaccatgcagaaagtgcaaaatacaacaaatttttggctgctttgtcgaga 746
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4663 ttggatcacgacaatgcagaaagtgcaaaatacaacaaatttttggctgctttgtcgaga 4722
Query: 747 aagaaagtcaacatggtcaatctactttacctcgtggcagtattggaagtttccatattg 806
| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 4723 agaaaagtcaacatggtcaatctactttacgtcgtggcagtattggaagttttcatattg 4782
Query: 807 ggatcgattggcttggcctacatgatcaggaattgacctggacaaaccttgaaa 860
|||||||||| |||| |||||||||||||||| |||||| ||||||| |||||
Sbjct: 4783 ggatcgattgtcttgtactacatgatcaggaatagacctgaacaaaccatgaaa 4836
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5395
Number of Sequences: 1807
Number of extensions: 5395
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)