BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZB05RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1671 1612 0.0
3x_Contig1746 159 1e-38
3x_Contig384 153 7e-37
3x_Contig1276 149 1e-35
3x_Contig1625 145 2e-34
>3x_Contig1671
Length = 12265
Score = 1612 bits (813), Expect = 0.0
Identities = 858/868 (98%), Gaps = 4/868 (0%)
Strand = Plus / Plus
Query: 47 ttatctgtttgaggaggtcctgggacacaaatgagaaaacagcacaataaccattcagta 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5088 ttatctgtttgaggaggtcctgggacacaaatgagaaaacagcacaataaccattcagta 5147
Query: 107 aaatacgagtgacaagcgacttaccgttgagctaagttgtcaaccatgactttcaacgaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5148 aaatacgagtgacaagcgacttaccgttgagctaagttgtcaaccatgactttcaacgaa 5207
Query: 167 agttgctgctttagctcagttgggagagcgtatgactgaagttcataaggtcctgtgttc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5208 agttgctgctttagctcagttgggagagcgtatgactgaagttcataaggtcctgtgttc 5267
Query: 227 gatccacagaagcagcatttcgatttatttttattgtcctttttgttgtccacgtgacaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5268 gatccacagaagcagcatttcgatttatttttattgtcctttttgttgtccacgtgacaa 5327
Query: 287 ctattcgcatgtattcccgttctaaagaaaaaagtcaatttgtcgatgaagaaaatcttg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5328 ctattcgcatgtattcccgttctaaagaaaaaagtcaatttgtcgatgaagaaaatcttg 5387
Query: 347 aaatttcgttgaacaaagttttattctctctctcttccaaaagttctttatgtgttgagg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5388 aaatttcgttgaacaaagttttattctctctctcttccaaaagttctttatgtgttgagg 5447
Query: 407 taattaaagagctttcatctcctcagatcaacccaattaactcaattgaaccatcataac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5448 taattaaagagctttcatctcctcagatcaacccaattaactcaattgaaccatcataac 5507
Query: 467 taacataatgtctgaaattgcccaagactccaacgtttccattttttccaaaaatgaaaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5508 taacataatgtctgaaattgcccaagactccaacgtttccattttttccaaaaatgaaaa 5567
Query: 527 gaaggccagagaattgatcctaaagttgggattgaagccaatccaaggtgtttctagagt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5568 gaaggccagagaattgatcctaaagttgggattgaagccaatccaaggtgtttctagagt 5627
Query: 587 cactttcaagaagaaggatggtcaaatctttgctatcgacagaccagaagtttacaagtc 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5628 cactttcaagaagaaggatggtcaaatctttgctatcgacagaccagaagtttacaagtc 5687
Query: 647 tcaaggtggtaactttgttgttttcggtgaagccaaggttgatgatttcactcaaagatt 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5688 tcaaggtggtaactttgttgttttcggtgaagccaaggttgatgatttcactcaaagatt 5747
Query: 707 agccaaggctcaagaatctctttcac-aaatgaaggtgttttgccagctggtcaagatgc 765
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 5748 agccaaggctcaagaatctcttcaacaaaatgaaggtgttttgccagctggtcaagatgc 5807
Query: 766 tgttttctaa-gacccacagtccatccaagcggacatgcaagctgctgctgacttcgnca 824
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 5808 tg-tttctaaggacccacagtccatccaagcggacatgcaagctgctgctgactccgcca 5866
Query: 825 ctgacaagccttctgctgacgacgctgtaaatgatgctgaaatcgatgaaactggtttga 884
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 5867 ctgacaagccttctgctgacgacgctgtagatgatgctgaagtcgatgaaactggtttga 5926
Query: 885 acgctgacgacattggaattggtcatgc 912
|||||||||||||| |||||||||||||
Sbjct: 5927 acgctgacgacatt-gaattggtcatgc 5953
>3x_Contig1746
Length = 26672
Score = 159 bits (80), Expect = 1e-38
Identities = 89/92 (96%)
Strand = Plus / Plus
Query: 166 aagttgctgctttagctcagttgggagagcgtatgactgaagttcataaggtcctgtgtt 225
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12142 aagtcgctgctttagctcagttgggagagcgtatgactgaagttcataaggtcctgtgtt 12201
Query: 226 cgatccacagaagcagcatttcgatttatttt 257
|||||||||||||||||||||| ||||||||
Sbjct: 12202 cgatccacagaagcagcatttctttttatttt 12233
>3x_Contig384
Length = 1678
Score = 153 bits (77), Expect = 7e-37
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 171 gctgctttagctcagttgggagagcgtatgactgaagttcataaggtcctgtgttcgatc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1518 gctgctttagctcagttgggagagcgtatgactgaagttcataaggtcctgtgttcgatc 1459
Query: 231 cacagaagcagcatttc 247
|||||||||||||||||
Sbjct: 1458 cacagaagcagcatttc 1442
>3x_Contig1276
Length = 6662
Score = 149 bits (75), Expect = 1e-35
Identities = 78/79 (98%)
Strand = Plus / Minus
Query: 166 aagttgctgctttagctcagttgggagagcgtatgactgaagttcataaggtcctgtgtt 225
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 aagtcgctgctttagctcagttgggagagcgtatgactgaagttcataaggtcctgtgtt 651
Query: 226 cgatccacagaagcagcat 244
|||||||||||||||||||
Sbjct: 650 cgatccacagaagcagcat 632
>3x_Contig1625
Length = 13618
Score = 145 bits (73), Expect = 2e-34
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 171 gctgctttagctcagttgggagagcgtatgactgaagttcataaggtcctgtgttcgatc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8392 gctgctttagctcagttgggagagcgtatgactgaagttcataaggtcctgtgttcgatc 8333
Query: 231 cacagaagcagca 243
|||||||||||||
Sbjct: 8332 cacagaagcagca 8320
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7994
Number of Sequences: 1807
Number of extensions: 7994
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 5
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)