BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZB06FM1.SCF screened BAC_end
(992 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1768 1326 0.0
>3x_Contig1768
Length = 25668
Score = 1326 bits (669), Expect = 0.0
Identities = 731/746 (97%), Gaps = 5/746 (0%)
Strand = Plus / Minus
Query: 87 ctgcagatcgtgtaagcgtcgatacttctgacacagcaaaggtatcaaccataacaccag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17387 ctgcagatcgtgtaagcgtcgatacttctgacacagcaaaggtatcaaccataacaccag 17328
Query: 147 gcacatctaagtacgataaaattgaaggatatctatgggaattattgaaaagggataaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17327 gcacatctaagtacgataaaattgaaggatatctatgggaattattgaaaagggataaaa 17268
Query: 207 atcttttctcccgtcagcaacggggctcgaaacagcggaaagaaatgaagaaagagacta 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17267 atcttttctcccgtcagcaacggggctcgaaacagcggaaagaaatgaagaaagagacta 17208
Query: 267 actggtctgacgaacaaattgaaggttggtcaagaatgattgagaagagtccaaagaggg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17207 actggtctgacgaacaaattgaaggttggtcaagaatgattgagaagagtccaaagaggg 17148
Query: 327 cacaactgctagaagaaaagtatattttcaaagggaacgttcggcaaggcaagaagacgt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17147 cacaactgctagaagaaaagtatattttcaaagggaacgttcggcaaggcaagaagacgt 17088
Query: 387 ttacaaaagcacgagaggataaagaaggttttgatcatcatgtagttgacagcaccgtaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17087 ttacaaaagcacgagaggataaagaaggttttgatcatcatgtagttgacagcaccgtaa 17028
Query: 447 attcacctaacactaacagtaataatgattctggcagagagaaaacacctactaccaaag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17027 attcacctaacactaacagtaataatgattctggcagagagaaaacacctactaccaaag 16968
Query: 507 aacctcttaccaaagaacaacaaaagagaaaaaatgctcgtaacgagaaactaaaatcaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16967 aacctcttaccaaagaacaacaaaagagaaaaaatgctcgtaacgagaaactaaaatcaa 16908
Query: 567 gtcgtgctaatcataatagaaaagcgggacacgataaaaagttagctaaaagtggtgttt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16907 gtcgtgctaatcataatagaaaagcgggacacgataaaaagttagctaaaagtggtgttt 16848
Query: 627 tatgatgaacattagaccagtatagatacatttacgaaaattgaagtcgattatcctgta 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16847 tatgatgaacattagaccagtatagatacatttacgaaaattgaagtcgattatcctgta 16788
Query: 687 tcttcctatttatctgnagatattatgaaatgcatttacttttaatatnattncttcgaa 746
|||||||||||||||| ||||||||||||||||||||||||| ||||| ||| |||||||
Sbjct: 16787 tcttcctatttatctgtagatattatgaaatgcatttactttaaatatcatt-cttcgaa 16729
Query: 747 actttcctttntctgggattctaaatttattcaaagaatcctcatttttcagcatcttca 806
|||||||||| ||| ||||||| ||||||||| || ||||||| |||||||||||||||
Sbjct: 16728 actttccttt-tcttggattct-aatttattccaaagatcctca-ttttcagcatcttca 16672
Query: 807 ttcaccttggacgatgcttnttttgg 832
||| ||| |||||||||| ||||||
Sbjct: 16671 -tcagcttcgacgatgcttcttttgg 16647
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8394
Number of Sequences: 1807
Number of extensions: 8394
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 992
length of database: 10,358,551
effective HSP length: 16
effective length of query: 976
effective length of database: 10,329,639
effective search space: 10081727664
effective search space used: 10081727664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)