BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZB06RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1364 1269 0.0
3x_Contig861 250 4e-66
>3x_Contig1364
Length = 7464
Score = 1269 bits (640), Expect = 0.0
Identities = 668/672 (99%), Gaps = 4/672 (0%)
Strand = Plus / Plus
Query: 43 cttggacttattaagttcttccatttcctcatcttctgatcttggtttataattgacccc 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6786 cttggacttattaagttcttccatttcctcatcttctgatcttggtttataattgacccc 6845
Query: 103 tgctctcatcaactccttatcgttaccatgttcacgaaacctttgcgtcgttgtctcgaa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6846 tgctctcatcaactccttatcgttaccatgttcacgaaacctttgcgtcgttgtctcgaa 6905
Query: 163 atattgcctagctttccttctgaacccaaataactctcgatttaacgaagaagtcttgct 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6906 atattgcctagctttccttctgaacccaaataactctcgatttaacgaagaagtcttgct 6965
Query: 223 cgcagtcgaatttgtttgaaaagtacctaaattagaggccttcttttgtccatataacgt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6966 cgcagtcgaatttgtttgaaaagtacctaaattagaggccttcttttgtccatataacgt 7025
Query: 283 tgcttcaatttgagggtccaagaaactaccttctgatatcatttaagctattgtattatc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7026 tgcttcaatttgagggtccaagaaactaccttctgatatcatttaagctattgtattatc 7085
Query: 343 cctttacaatgaaattgttgaaaaaaatgagtgactatggttgagtagcaattgtttgtt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7086 cctttacaatgaaattgttgaaaaaaatgagtgactatggttgagtagcaattgtttgtt 7145
Query: 403 tgatttattggctatttggtaaaagttgtgtgtattaagttacaaatccgtttatatata 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7146 tgatttattggctatttggtaaaagttgtgtgtattaagttacaaatccgtttatatata 7205
Query: 463 atgttcggttggtacagatatgacaactgttctcacaatttaacctgcttttatagtccg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7206 atgttcggttggtacagatatgacaactgttctcacaatttaacctgcttttatagtccg 7265
Query: 523 attctttaggtttgtgacactgacctcacggtgtcagtttttgcacatagtgatatatca 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7266 attctttaggtttgtgacactgacctcacggtgtcagtttttgcacatagtgatatatca 7325
Query: 583 agaaaaagatttgtattgcgaaaggaatactgacatgaaagtcagactatgaaaacgatg 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7326 agaaaaagatttgtattgcgaaaggaatactgacatgaaagtcagactatgaaaacgatg 7385
Query: 643 tgcgaccctctttc-ataaagattttacagtccctaag-atcagtagaagaggaaaggaa 700
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 7386 tgcgaccctctttcaataaagattttacagtccctaagaatcagtagaagagg-aaggaa 7444
Query: 701 g-tatctcttgg 711
| ||||||||||
Sbjct: 7445 gttatctcttgg 7456
>3x_Contig861
Length = 2397
Score = 250 bits (126), Expect = 4e-66
Identities = 212/229 (92%), Gaps = 9/229 (3%)
Strand = Plus / Minus
Query: 702 tatctcttggatgccaaagaagagtttctganaagaatgctaatttacagtatacaacaa 761
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 2390 tatctcttggatgccaaagaagagtttctga-aagaatgctaatttacagtatacaacaa 2332
Query: 762 ttattgagatgcttatttgtcgggggatcagacacttacattacacatgtcaccacgggc 821
| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||
Sbjct: 2331 taattgagatgcttatttgtc-ggggatcagacactaacattacacatgtcaccac-ggc 2274
Query: 822 gtgaaagtct-cactttcataaattcacgt-ataccatggtagcataggcagaccctcc- 878
||| |||||| ||| ||||| ||||||||| ||||||||||||||||||||||| ||||
Sbjct: 2273 gtg-aagtctccaccttcattaattcacgtaataccatggtagcataggcagacactcca 2215
Query: 879 agtttggatttgat-ataactgcctttttggta-catnctttactttca 925
|||||| ||||||| ||||||||||||||| || ||| |||||||||||
Sbjct: 2214 agtttgaatttgataataactgcctttttgttaccatcctttactttca 2166
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7423
Number of Sequences: 1807
Number of extensions: 7423
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 2
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)