BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZB07RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig370 1306 0.0
>3x_Contig370
Length = 983
Score = 1306 bits (659), Expect = 0.0
Identities = 691/700 (98%), Gaps = 3/700 (0%)
Strand = Plus / Plus
Query: 46 ccagagtattttttttcttcactataaagagaacatcatttcccacgtcacaaacgggta 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ccagagtattttttttcttcactataaagagaacatcatttcccacgtcacaaacgggta 334
Query: 106 acagcatttattcaaaaatttcaatatatcaggtcacgtgaagatcatttcctacgctct 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 acagcatttattcaaaaatttcaatatatcaggtcacgtgaagatcatttcctacgctct 394
Query: 166 gatttttccaataaaaaatctttcttctaaaacatcccagagctctccagttttgtacga 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gatttttccaataaaaaatctttcttctaaaacatcccagagctctccagttttgtacga 454
Query: 226 catattctacgttagattcgtgccaaaatgtgtactcatcagcttttctaatatctacta 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 catattctacgttagattcgtgccaaaatgtgtactcatcagcttttctaatatctacta 514
Query: 286 acatggaaaatgagtattttaaagcttttcattgaaatgatttcgattttaacattaaga 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 acatggaaaatgagtattttaaagcttttcattgaaatgatttcgattttaacattaaga 574
Query: 346 tttgtatgaagatgaggcttctaagagacgcatacaagaacaggattatttgggactttt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tttgtatgaagatgaggcttctaagagacgcatacaagaacaggattatttgggactttt 634
Query: 406 cagttgcgagtgcagagcgaagtgaagtagtaatctttgcgccagtgtttctgttcaata 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 cagttgcgagtgcagagcgaagtgaagtagtaatctttgcgccagtgtttctgttcaata 694
Query: 466 tctataacaaatgcctcgttttttcccatctctcaaacagggtttgagaaaccttgctac 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tctataacaaatgcctcgttttttcccatctctcaaacagggtttgagaaaccttgctac 754
Query: 526 tgcggtagagacggaatctacagtagcagtcaaagccagtcagttcaagagacctcgtca 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tgcggtagagacggaatctacagtagcagtcaaagccagtcagttcaagagacctcgtca 814
Query: 586 atccgtacaaagcagaatcttggagtacactcgtgaagcgat--aanactgagaaaccac 643
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 815 atccgtacaaagcagaatcttggagtacactcgtgaagcgattaaaaactgagaaaccac 874
Query: 644 attntaaagttgggtggtgcagagctctattttccttaagcgagagttattctactaaga 703
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 875 attttaaag-tgggtggtgcagagctctattttcctaaagcgagagttattctactaaga 933
Query: 704 cccaatgctaaacacacttcatatcaagcgaaattcatcg 743
|| ||||||||||||||| ||||||||||| |||||||||
Sbjct: 934 ccaaatgctaaacacactccatatcaagcggaattcatcg 973
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6782
Number of Sequences: 1807
Number of extensions: 6782
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)