BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC46ZB08FM1.SCF screened BAC_end
         (946 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1136                                                        1130   0.0  

>3x_Contig1136 
          Length = 5035

 Score = 1130 bits (570), Expect = 0.0
 Identities = 614/625 (98%), Gaps = 3/625 (0%)
 Strand = Plus / Plus

                                                                        
Query: 87   tggtcatgaccccaacctcgttcaattatgttattgtctcccaccaacaggaaacgacga 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1771 tggtcatgaccccaacctcgttcaattatgttattgtctcccaccaacaggaaacgacga 1830

                                                                        
Query: 147  tgcagcaaattatttcacttcacaccctgtcttcaagcatttgacgttcattggtagtaa 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1831 tgcagcaaattatttcacttcacaccctgtcttcaagcatttgacgttcattggtagtaa 1890

                                                                        
Query: 207  acctgtcgcacatcacgttttgaaggctgctgcagattctttaaccccagttgttgttga 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891 acctgtcgcacatcacgttttgaaggctgctgcagattctttaaccccagttgttgttga 1950

                                                                        
Query: 267  attgggtggtaaagatgctttcattgttttggattccgtaaaggacttacaagctctctc 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1951 attgggtggtaaagatgctttcattgttttggattccgtaaaggacttacaagctctctc 2010

                                                                        
Query: 327  ttcgattattatgcgtggtactttccaatcggctggtcaaaattgtatcggtatcgagag 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2011 ttcgattattatgcgtggtactttccaatcggctggtcaaaattgtatcggtatcgagag 2070

                                                                        
Query: 387  agttatagtttctgccaagaattatgatgcattagtctctattctcaacgatagagtagg 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2071 agttatagtttctgccaagaattatgatgcattagtctctattctcaacgatagagtagg 2130

                                                                        
Query: 447  gcaattgaggttgggatctgatattgataatttagaagatgtcgatatgggtgcaatgat 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2131 gcaattgaggttgggatctgatattgataatttagaagatgtcgatatgggtgcaatgat 2190

                                                                        
Query: 507  ttccgacaatagatttggtcaattagaaaatctaatatctgatgcgttgtcaaaaggtgc 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2191 ttccgacaatagatttggtcaattagaaaatctaatatctgatgcgttgtcaaaaggtgc 2250

                                                                        
Query: 567  caagttattgcatgggggtttctcgttacaatcatccaaactatccttaaggtcactttt 626
            |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2251 caagttattgcatggggg-ttctcgttacaatcatccaaactatcctcaaggtcactttt 2309

                                                                        
Query: 627  tccaacccacgctttttggtggatgttactggagatatgcanatcttgcacaatgtaata 686
            |||||||||||| |||||||||||||||||| ||||||||| |||| |||||||| | ||
Sbjct: 2310 tccaacccacgc-ttttggtggatgttactgaagatatgcagatctcgcacaatgaagta 2368

                                     
Query: 687  tttcgacccaattctaactgttatg 711
             ||||  ||||||||||||||||||
Sbjct: 2369 -ttcggaccaattctaactgttatg 2392


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5847
Number of Sequences: 1807
Number of extensions: 5847
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)