BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZB08RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1427 1584 0.0
>3x_Contig1427
Length = 10253
Score = 1584 bits (799), Expect = 0.0
Identities = 843/858 (98%)
Strand = Plus / Minus
Query: 48 tgaagaaattccttgagagagcagaaactcaagagaaacaaattaagaagttcgttcttg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10168 tgaagaaattccttgagagagcagaaactcaagagaaacaaattaagaagttcgttcttg 10109
Query: 108 aacaacagagaaaatataaatggtcttccaaccaagggccagcttcacgtatatcatcag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10108 aacaacagagaaaatataaatggtcttccaaccaagggccagcttcacgtatatcatcag 10049
Query: 168 gatcgttgctatttcaggaacatttaccttctgttcgattgaggaagaattcttcagttg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10048 gatcgttgctatttcaggaacatttaccttctgttcgattgaggaagaattcttcagttg 9989
Query: 228 gctcatacctttcgaaatgtgaaagatatatacacccgtttgcgccgaccgaagttagag 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9988 gctcatacctttcgaaatgtgaaagatatatacacccgtttgcgccgaccgaagttagag 9929
Query: 288 aaatacttctctatgatgttactaaatcgaaagaaaagatcgaaccaccagaatccacta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9928 aaatacttctctatgatgttactaaatcgaaagaaaagatcgaaccaccagaatccacta 9869
Query: 348 ttcttgtgcatgtacaaaagaaggaccttttcgcagttgtaaatggcggtagaatagcac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9868 ttcttgtgcatgtacaaaagaaggaccttttcgcagttgtaaatggcggtagaatagcac 9809
Query: 408 ctgatcagttgttggccgtaataaatcaatacgagaacggagggtggaagttgataggcg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9808 ctgatcagttgttggccgtaataaatcaatacgagaacggagggtggaagttgataggcg 9749
Query: 468 atgtgaacagagatacttacaagattgtcttccagaagaattacatgagaccagcactca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9748 atgtgaacagagatacttacaagattgtcttccagaagaattacatgagaccagcactca 9689
Query: 528 tagagaccaaaggaaaaatagctatcactttatttggtattaccctaggatacatagccg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9688 tagagaccaaaggaaaaatagctatcactttatttggtattaccctaggatacatagccg 9629
Query: 588 ttgtccaaccactaatcgactatattaattatttcaatcgataaattaatattgtatact 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9628 ttgtccaaccactaatcgactatattaattatttcaatcgataaattaatattgtatact 9569
Query: 648 gtacaatccgaatgacactcatataggaaaaacagaatttaaaatgtatgaatagntaat 707
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 9568 gtacaatccgaatgacactcatataggaaaaacagaattaaaaatgtatgaatagttaat 9509
Query: 708 ctttatatatatatctatagtacaatacccttctgatcaaccgtgtgtgtagaaaatgac 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9508 ctttatatatatatctatagtacaatacccttctgatcaaccgtgtgtgtagaaaatgac 9449
Query: 768 atccgaaattgatcgacattatcagttcatttcaatgtcttttaattcaccaataggttt 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9448 atccgaaattgatcgacattatcagttcatttcaatgtcttttaattcaccaataggttt 9389
Query: 828 tacgggttttggtccccccagaaccttttcggctttatcttgaatcctaatcagttttaa 887
||| ||||||| |||||| |||||||||||| ||||||| | || || |||||||||||
Sbjct: 9388 tacaggttttgttcccccaagaaccttttcgcctttatcattgattcttatcagttttaa 9329
Query: 888 ggacctcaaacttccaaa 905
| ||||||| ||||||
Sbjct: 9328 agtactcaaacctccaaa 9311
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9263
Number of Sequences: 1807
Number of extensions: 9263
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)