BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZB09FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1779 1178 0.0
>3x_Contig1779
Length = 24855
Score = 1178 bits (594), Expect = 0.0
Identities = 646/659 (98%), Gaps = 4/659 (0%)
Strand = Plus / Minus
Query: 88 ttctttgcctgttcccaattcgttaaatcggataaatcaatcatgaacactaaaagatcg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8687 ttctttgcctgttcccaattcgttaaatcggataaatcaatcatgaacactaaaagatcg 8628
Query: 148 acttgttggaaacatcgatcccagagtttttgaaagcgggtttggccggctaaatcgtat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8627 acttgttggaaacatcgatcccagagtttttgaaagcgggtttggccggctaaatcgtat 8568
Query: 208 acctttagattggtatggttcggcagctttacatctttgatgtttactcctaaagttggt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8567 acctttagattggtatggttcggcagctttacatctttgatgtttactcctaaagttggt 8508
Query: 268 atcgtgtcgaccacaaactcctctccagctatcagattggtgaaagtcgttttacctgag 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8507 atcgtgtcgaccacaaactcctctccagctatcagattggtgaaagtcgttttacctgag 8448
Query: 328 ttttgcaaaccaacaactgcaatgctcaattgtttctgagtgctcgcagtataaagccaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8447 ttttgcaaaccaacaactgcaatgctcaattgtttctgagtgctcgcagtataaagccaa 8388
Query: 388 tcccaaaattgattgaaccatttccagaagcaatccatacctactcaacagctcgagcta 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8387 tcccaaaattgattgaaccatttccagaagcaatccatacctactcaacagctcgagcta 8328
Query: 448 tgaccgtttggtctgtttttccttctactttctcttggaattgtagcattgcgatgtatc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8327 tgaccgtttggtctgtttttccttctactttctcttggaattgtagcattgcgatgtatc 8268
Query: 508 agttgtttaaatgtcaacaataatagtgacccttaacttctatagaaaaaccngctggaa 567
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 8267 agttgtttaaatgtcaacaataatagtgaccctaaacttctatagaaaaaccggctggaa 8208
Query: 568 gggcanaaacagaacaagggagaatagctgccgaattgtatcttgtgctacattaacgct 627
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8207 gggcaaaaacagaacaagggagaatagctgccgaattgtatcttgtgctacattaacgct 8148
Query: 628 gggtacgtta-tacatctacattatcaaattgcagtgaaagccgnatataatattggata 686
|||||| || ||||||||||||||||||||||||||||||||| ||||| |||| |||
Sbjct: 8147 -ggtacggtattacatctacattatcaaattgcagtgaaagccgtatatataattgtata 8089
Query: 687 tatagatttatctacaa-ttaatgtgttctttggtatgcaagat-atcgaattgtttga 743
||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 8088 tatagatttatctacaatttaatgtgttctttggtatgcaagatcatcgaatcgtttga 8030
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7570
Number of Sequences: 1807
Number of extensions: 7570
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)