BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZB09RM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1529 1328 0.0
>3x_Contig1529
Length = 11812
Score = 1328 bits (670), Expect = 0.0
Identities = 820/858 (95%), Gaps = 10/858 (1%)
Strand = Plus / Minus
Query: 50 atcatcaaatggtaaattgtc-tatggaagttcaatttcgggaacaaaagccaagaatgg 108
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 11282 atcatcaaatggtaaattgtcatatggaagttcaatttcgggaacaaaagccaagaatgg 11223
Query: 109 ctttgccaaatcaatcaaacggactgtaacaaaaaaataaatattaatttattttagaaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11222 ctttgccaaatcaatcaaacggactgtaacaaaaaaataaatattaatttattttagaaa 11163
Query: 169 tgttgttagtaactgttatagcatacgagaatagttccttgactaaaatgtaccttgcag 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11162 tgttgttagtaactgttatagcatacgagaatagttccttgactaaaatgtaccttgcag 11103
Query: 229 taccttcaaccgataatttcaggtaccgaaaaagagaatgaacctaaaggcaagttaatg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11102 taccttcaaccgataatttcaggtaccgaaaaagagaatgaacctaaaggcaagttaatg 11043
Query: 289 ggaaatattccagagtttaaccacatgtaacatacaacctgccatttggtggatagctga 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11042 ggaaatattccagagtttaaccacatgtaacatacaacctgccatttggtggatagctga 10983
Query: 349 aaataaaatgaaagattagagcccttggtagtctttcaatcagctataaatctgggtccc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10982 aaataaaatgaaagattagagcccttggtagtctttcaatcagctataaatctgggtccc 10923
Query: 409 gaaagtgtacatttgttgaacttacagatatttgttcaattgcaatcgtttttaatcttt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10922 gaaagtgtacatttgttgaacttacagatatttgttcaattgcaatcgtttttaatcttt 10863
Query: 469 ccatgatatcgcctttcgaacaaacaatttttttcatactggtgctgccttttc-aggta 527
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 10862 ccatgatatcgcctttcgaacaaacaatttttttcatactggtgctgccttttcaaggta 10803
Query: 528 ctcagtcgtttgttacgaaactcacgtgatcaccctaatatcacgtgagttataggagga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10802 ctcagtcgtttgttacgaaactcacgtgatcaccctaatatcacgtgagttataggagga 10743
Query: 588 aaggtatccagtggttatacagcanatacgaaacgttgaacgaataacaactggttagcc 647
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 10742 aaggtatccagtggttatacagcaaatacgaaacgttgaacgaataacaactggttagcc 10683
Query: 648 tagtaatggctgt-agtttttgtttcaattgaactagtgaataggccattagatgtncta 706
||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 10682 tagtaat-gctgtaagtttttggttcaattgaactagtgaataggccataggatgtccta 10624
Query: 707 tataaatcctgcttcctttcctgnctttttccctttgcaggaaatccaaat-atctccna 765
||||| |||||||||||||||| |||||||||| |||||||||||||||| ||||| |
Sbjct: 10623 tataatccctgcttcctttcctgcctttttccctctgcaggaaatccaaataatctctta 10564
Query: 766 tttattatttccaccaaataagtc-atattactttc-aacagttgaaaatggttagtttt 823
| ||||||| |||||||| |||| |||| |||||| ||||||||||| |||| ||| ||
Sbjct: 10563 tatattattcacaccaaat-agtcaatatcactttcaaacagttgaaattggtaagtatt 10505
Query: 824 ccattc-aagaaaaccattttaaaatctctccagctaatcaaatcgaattattagcgaag 882
||||| |||| | |||||| |||||||| | |||||||| |||||||||| ||||| |
Sbjct: 10504 -cattcaaagagacccatttgaaaatctcccaggctaatcagatcgaattataagcgatg 10446
Query: 883 tctaaacttttgaaattg 900
||||| ||||||||||||
Sbjct: 10445 tctaagcttttgaaattg 10428
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8345
Number of Sequences: 1807
Number of extensions: 8345
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)