BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC46ZB10FM1.SCF screened BAC_end (993 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1667 432 e-121 >3x_Contig1667 Length = 12071 Score = 432 bits (218), Expect = e-121 Identities = 328/358 (91%), Gaps = 5/358 (1%) Strand = Plus / Plus Query: 87 tgagaataccatattttagagcgtttactatgccttggactagaactagggcttatccac 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6629 tgagaataccatattttagagcgtttactatgccttggactagaactagggcttatccac 6688 Query: 147 atgcatttatagtaccagatcaaaaaagaggtggcaactataactattttacacatgttc 206 |||||||||||||| |||| |||||||||||||| || ||||| ||||||| | ||||| Sbjct: 6689 atgcatttatagtaacagaacaaaaaagaggtggtaattataaatattttaaaaatgttt 6748 Query: 207 ttttcgagaacatcttttggaaaggaatcagtggtaaggttaatgaatggagagaaacca 266 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct: 6749 ttttcgagaacatcttttggaaaggaataagtggtaaggttaatgaatggagagaaaaaa 6808 Query: 267 aattaaaattgcccaagacgaatctagtttcgatgcagcaaaatcgtgttccatttttat 326 ||||||||||| ||||||||||||||||||||| || ||||||||||| |||||||| Sbjct: 6809 aattaaaattgaaaaagacgaatctagtttcgatgaagaaaaatcgtgttaaatttttat 6868 Query: 327 acaatgtgtctccgatagtctttccaccaagtgtcgattttaatgaaatggataaaagta 386 | ||||||||||||||||| |||||||||||||||||||| |||| ||||||| |||||| Sbjct: 6869 aaaatgtgtctccgatagtatttccaccaagtgtcgatttcaatg-aatggatcaaagta 6927 Query: 387 acaagtttcttgttttcttgatgaaaaaacggtccttacaaacccccctgcagaattt 444 ||| ||| | || |||||||||| ||||||||||| |||||| ||||||||||||||| Sbjct: 6928 acaggttac-tggtttcttgatg-aaaaacggtcc-tacaaa-ccccctgcagaattt 6981 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,055 Number of Sequences: 1807 Number of extensions: 16055 Number of successful extensions: 115 Number of sequences better than 1.0e-20: 1 length of query: 993 length of database: 10,358,551 effective HSP length: 16 effective length of query: 977 effective length of database: 10,329,639 effective search space: 10092057303 effective search space used: 10092057303 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)