BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZB10RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1639 1231 0.0
>3x_Contig1639
Length = 14140
Score = 1231 bits (621), Expect = 0.0
Identities = 737/756 (97%), Gaps = 16/756 (2%)
Strand = Plus / Minus
Query: 48 cggcatatgcttcctatacgcgacaacggaatgttggtaattctatgtcaggcggtcatg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8843 cggcatatgcttcctatacgcgacaacggaatgttggtaattctatgtcaggcggtcatg 8784
Query: 108 ttaagggtgttaagaaagcagctttttttttagcgctaagactaagaggcagtttttgtc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8783 ttaagggtgttaagaaagcagctttttttttagcgctaagactaagaggcagtttttgtc 8724
Query: 168 tggccggaaaaatgtttatcacgcttttacggtgacgaatacggataaatcagcgatcta 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8723 tggccggaaaaatgtttatcacgcttttacggtgacgaatacggataaatcagcgatcta 8664
Query: 228 ctactttgaaatatgagtcgttgatcagcatagaagatgttgtggcttggcacaggaatg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8663 ctactttgaaatatgagtcgttgatcagcatagaagatgttgtggcttggcacaggaatg 8604
Query: 288 tctatttcacctagtatctacctcagttgaattggcactataaacatttcagcctttttg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8603 tctatttcacctagtatctacctcagttgaattggcactataaacatttcagcctttttg 8544
Query: 348 aagaaagaagtgtcactagtatcaacttcgatcgaacttaactgcaggaactacaaatat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8543 aagaaagaagtgtcactagtatcaacttcgatcgaacttaactgcaggaactacaaatat 8484
Query: 408 tgagaaaatatagctagtggtcagttgttgaatttacctcagcgaccattttcctgtcat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8483 tgagaaaatatagctagtggtcagttgttgaatttacctcagcgaccattttcctgtcat 8424
Query: 468 gtcatgaaatgttcgatagatcaaacgatgaaatctttaaagctgtcaaaatccgcgaag 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8423 gtcatgaaatgttcgatagatcaaacgatgaaatctttaaagctgtcaaaatccgcgaag 8364
Query: 528 aattttaagaaaagcaatgagatgcgaaagtaactttctcagccttgctgttccttcata 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8363 aattttaagaaaagcaatgagatgcgaaagtaactttctcagccttgctgttccttcata 8304
Query: 588 gcctatgccaaactgcagatcatgtttgccaaatacaaataatcacacgttttgacattc 647
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 8303 gcctatgccaaactgcagatcatgtttgccaaatacaaataatcacacg-tttgacattc 8245
Query: 648 aaaaaacctattttaagcgaaaaaactctttttctagaaacacattgtcaaaagaaatgg 707
|||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||||
Sbjct: 8244 -aaaaacctattttaagcg-aaaaactc-ttttctagaaacaca-tgtc-aaagaaatgg 8190
Query: 708 atatttttgcacttaacactttncctttcgttaaatgtacttcgattgaattaaaatttt 767
||| | |||||| |||||||| || |||| ||||||||| |||| |||| ||||| |||
Sbjct: 8189 ata-tcttgcac-taacactt--cccttcg-taaatgtac-tcga-tgaa-taaaacttt 8138
Query: 768 gttcggaagccagctgctttcttctgctactattat 803
|||| |||||||||||| ||||||||||||||||||
Sbjct: 8137 gttc-gaagccagctgc-ttcttctgctactattat 8104
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7195
Number of Sequences: 1807
Number of extensions: 7195
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)