BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZB11RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1780 1568 0.0
>3x_Contig1780
Length = 27883
Score = 1568 bits (791), Expect = 0.0
Identities = 857/872 (98%), Gaps = 6/872 (0%)
Strand = Plus / Minus
Query: 46 tttcactactgcattcccatcccactcactacttttgctggtacagaagatcctcgataa 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23861 tttcactactgcattcccatcccactcactacttttgctggtacagaagatcctcgataa 23802
Query: 106 aacttttgaagaataaacagttattaacttttcattcgcttcaaatttttctttcatcca 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23801 aacttttgaagaataaacagttattaacttttcattcgcttcaaatttttctttcatcca 23742
Query: 166 tacaacacacttgctttctttcatccaccatcatatcatattcgcatatcctggccgctg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23741 tacaacacacttgctttctttcatccaccatcatatcatattcgcatatcctggccgctg 23682
Query: 226 cagaggttatttctttgactgtatcattgttaagaatctgatctccgttataaaacctga 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23681 cagaggttatttctttgactgtatcattgttaagaatctgatctccgttataaaacctga 23622
Query: 286 tactcaatcctaacatccggtctgctcatatcaagttgtttcttgctttcactttttcta 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23621 tactcaatcctaacatccggtctgctcatatcaagttgtttcttgctttcactttttcta 23562
Query: 346 tcgctaaacagaggaagactttcataacaactaccccgcaaagattatagaaaagaatca 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23561 tcgctaaacagaggaagactttcataacaactaccccgcaaagattatagaaaagaatca 23502
Query: 406 ctcttttgcttgttaattgaatcctcatagtcgatctacaatcgtctcagggtagaataa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23501 ctcttttgcttgttaattgaatcctcatagtcgatctacaatcgtctcagggtagaataa 23442
Query: 466 caaaaagtagaacgtcgcactacattacactttaacggctaaacgttttgttacgtttga 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23441 caaaaagtagaacgtcgcactacattacactttaacggctaaacgttttgttacgtttga 23382
Query: 526 gtcattcagctggtctgtcccaattttttattcgttttctcttatcttccctcaattctc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23381 gtcattcagctggtctgtcccaattttttattcgttttctcttatcttccctcaattctc 23322
Query: 586 aatacattgtggctntagttgtgaaatagaattatctgcccttctacaatactcctttga 645
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23321 aatacattgtggctttagttgtgaaatagaattatctgcccttctacaatactcctttga 23262
Query: 646 tattctctttgttcaaaataaagttcacttaaacaaatacaatctatttttatttataca 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23261 tattctctttgttcaaaataaagttcacttaaacaaatacaatctatttttatttataca 23202
Query: 706 tgatgtcaaatctgaccatggtagattcaaactatatgaattgcataagaaggttcgatt 765
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 23201 tgatgtcaaatctgaccatggtagattcaaactatatgaattgcataagaagg-tcgatt 23143
Query: 766 tggaatgagaaagcttcttatccanatttgattgagatggaattgaaatctcac-aagct 824
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 23142 tggaatgagaaagcttctaatccaaatttgattgagatggaattgaaatctcacaaagct 23083
Query: 825 acgattaatg-aaatgcttncacaatcttctctagattggtttgaaaaggattccagcac 883
|||||||||| |||||| | |||||||||||||||||||| ||||||| || ||||||||
Sbjct: 23082 acgattaatgaaaatgcatccacaatcttctctagattgg-ttgaaaatgaatccagcac 23024
Query: 884 -acaatttctttgaaattgttttaagtcccaa 914
||| ||||| ||||| |||||||||||||||
Sbjct: 23023 aacagtttctatgaaa-tgttttaagtcccaa 22993
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8179
Number of Sequences: 1807
Number of extensions: 8179
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)