BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZB12RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig718 1360 0.0
>3x_Contig718
Length = 1395
Score = 1360 bits (686), Expect = 0.0
Identities = 868/912 (95%), Gaps = 13/912 (1%)
Strand = Plus / Plus
Query: 40 acatctgctatttcttggttagatcaaca-ggttacttgaagaaagttatcgttatatcg 98
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 81 acatctgctatttcttggttagatcaacaaggttacttgaagaaagttatcgttatatcg 140
Query: 99 cctgcaaacccctcaataaagatacgatgcgtccagttcgtaaaatcctattttccagaa 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 cctgcaaacccctcaataaagatacgatgcgtccagttcgtaaaatcctattttccagaa 200
Query: 159 gaagttactggaaacaatgagttcgaagatgaaagcgctgatgaagacgagaacgaaggt 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagttactggaaacaatgagttcgaagatgaaagcgctgatgaagacgagaacgaaggt 260
Query: 219 gatggagatgaaggtggtacgggtaacgatgatgttgaaaagacgtcgttggatgaagag 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatggagatgaaggtggtacgggtaacgatgatgttgaaaagacgtcgttggatgaagag 320
Query: 279 gagttaatggaaggctttgacaaagtcaatgccacgaatatactacaagattcaaatttg 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagttaatggaaggctttgacaaagtcaatgccacgaatatactacaagattcaaatttg 380
Query: 339 gtaatacaagaagctccatctgagaaaaaagaagttaccatcaatagattctacccgcta 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaatacaagaagctccatctgagaaaaaagaagttaccatcaatagattctacccgcta 440
Query: 399 caaacacaaatatattccatggctgataaagctgggttgacgggtatttctaccttggac 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaacacaaatatattccatggctgataaagctgggttgacgggtatttctaccttggac 500
Query: 459 ctaatatctaaatttgtgggaccagattataaaagatgtttttctaagaacactgagtat 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaatatctaaatttgtgggaccagattataaaagatgtttttctaagaacactgagtat 560
Query: 519 ttcattgaggggacaagccagaaatcatccaagtccttttcagataatgatatcggattg 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcattgaggggacaagccagaaatcatccaagtccttttcagataatgatatcggattg 620
Query: 579 gttaaaatatatgattttgaagggaagaaagaatt-catcggatattcacttagaagaac 637
||||||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||
Sbjct: 621 gttaaaatatatgattttgaaggaaagaagaaattccatcggatattcactaagaagaac 680
Query: 638 ttcgccagattgactgatcaagaggctggnagcagacataagagtttgccccganatcga 697
||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||
Sbjct: 681 ttcgccagattgactgatcaagaggctggaagcagacataagagtttg-cccgaaatcga 739
Query: 698 agaacaccctcacacgtttagaagagtttagtaaaatgatttttgtaccactcaatgcct 757
|||||| ||||||||| ||||||||||| |||||||||| |||||||||||||||||| |
Sbjct: 740 agaacaacctcacacg-ttagaagagttaagtaaaatgaattttgtaccactcaatgctt 798
Query: 758 cgtttgaagtacatgaatgaccgagattagggacgttttcttttgggaccgggaaatgga 817
|| |||| ||||||||||||| |||| || |||||||||||||||| || | ||| |||
Sbjct: 799 cg-ttgaggtacatgaatgacggaga-taaggacgttttcttttggcacggtgaattgg- 855
Query: 818 atatttcttgcgagcacc-aaacgttagtacaagggaaaaagagaattacgttaccagat 876
||| ||| |||||||||| |||||| ||||| ||| | ||||||||| ||||||||||||
Sbjct: 856 ata-ttcctgcgagcaccaaaacgtcagtacgaggaagaaagagaataacgttaccagat 914
Query: 877 ggccctgcgaaaacccaacggttttaa-gttgcttaccctaca-tcgacttg-aaattga 933
| | ||||| |||||||| || |||| |||||| |||||||| ||||| || |||||||
Sbjct: 915 gccgctgcg-aaacccaagcgtattaaggttgctaaccctacagtcgacatgaaaattga 973
Query: 934 acttgatgagcc 945
|| |||||||||
Sbjct: 974 acatgatgagcc 985
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7794
Number of Sequences: 1807
Number of extensions: 7794
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)