BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC46ZC01FM1.SCF screened BAC_end
(1033 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig897 599 e-171
>3x_Contig897
Length = 3942
Score = 599 bits (302), Expect = e-171
Identities = 351/362 (96%), Gaps = 4/362 (1%)
Strand = Plus / Minus
Query: 86 agcacccacttctatcaagacaagggtaggtactacttaggcaaggaagggaaagaccac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3061 agcacccacttctatcaagacaagggtaggtactacttaggcaaggaagggaaagaccac 3002
Query: 146 gagatataaaatggtgcctctacccaatcgagaagcgatggttcctgtaattaggctctg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3001 gagatataaaatggtgcctctacccaatcgagaagcgatggttcctgtaattaggctctg 2942
Query: 206 gtatgtatatatttttatatgtatatatggataggaaaataaagttttgaattgggatgc 265
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2941 gtatgtatatatgtatatatgtatatatggataggaaaataaagttttgaattgggatgc 2882
Query: 266 aggctcagatcaaaccacgttgttggtatggatactgcgtcagaaagaagaagaagagtt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2881 aggctcagatcaaaccacgttgttggtatggatactgcgtcagaaagaagaagaagagtt 2822
Query: 326 tattatgctcttgcgatgagtggttttttcttttctttttaagacaatctctaatcttga 385
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 2821 tattatgctcttgcgatgagtggttttttcttttctttttaagacaatctcgaatctgca 2762
Query: 386 atgctttggcagactttttaaagacgtctttgcccagaaacaaccgtgggttccgaccat 445
|||||||||||||| | ||||||||||| ||||| |||||||| |||||| |||||||||
Sbjct: 2761 atgctttggcagac-tcttaaagacgtc-ttgccaagaaacaa-cgtggg-tccgaccat 2706
Query: 446 tt 447
||
Sbjct: 2705 tt 2704
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,366
Number of Sequences: 1807
Number of extensions: 14366
Number of successful extensions: 188
Number of sequences better than 1.0e-20: 1
length of query: 1033
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1017
effective length of database: 10,329,639
effective search space: 10505242863
effective search space used: 10505242863
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)